/**
* An override that
* <ul>
- * <li>uses Source (column 2) as feature type instead of the default column 3</li>
+ * <li>uses Source (column 2) as feature type instead of the default column
+ * 3</li>
* <li>sets "InterProScan" as the feature group</li>
* <li>extracts "signature_desc" attribute as the feature description</li>
* </ul>
SequenceOntologyI so = SequenceOntologyFactory.getInstance();
String type = columns[TYPE_COL];
if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH)
- || (".".equals(columns[SOURCE_COL]) && so.isA(type,
- SequenceOntologyI.POLYPEPTIDE)))
+ || (".".equals(columns[SOURCE_COL])
+ && so.isA(type, SequenceOntologyI.POLYPEPTIDE)))
{
return true;
}
* GFF field 'ID' rather than the usual 'Target' :-O
*/
@Override
- protected String findTargetId(String target, Map<String, List<String>> set)
+ protected String findTargetId(String target,
+ Map<String, List<String>> set)
{
List<String> ids = set.get(ID);
if (ids == null || ids.size() != 1)