package jalview.io.gff;
+import jalview.bin.Cache;
+import jalview.ext.so.SequenceOntology;
+
+/**
+ * A factory class that returns a model of the Sequence Ontology. If the user's
+ * Jalview properties file has the line <br>
+ * USE_SO_LITE = true <br>
+ * then a hard-coded subset will be used, otherwise the full ontology (as
+ * downloaded at a point in time).
+ *
+ * @author gmcarstairs
+ *
+ */
public class SequenceOntologyFactory
{
private static SequenceOntologyI instance;
{
if (instance == null)
{
- // instance = new SequenceOntology();
- instance = new SequenceOntologyLite();
+ if (Cache.getDefault("USE_SO_LITE", false))
+ {
+ instance = new SequenceOntologyLite();
+ }
+ else
+ {
+ instance = new SequenceOntology();
+ }
}
return instance;
}