+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
package jalview.io.packed;
import jalview.datamodel.AlignmentI;
*/
List<AlignmentSet> al;
public class AlignmentSet {
- AlignmentI al;
- List<jalview.io.NewickFile> trees;
+ public AlignmentI al;
+ public List<jalview.io.NewickFile> trees;
AlignmentSet(AlignmentI a) {
al = a;
trees = new ArrayList<jalview.io.NewickFile>();
*/
Hashtable seqDetails;
+ public boolean relaxedIdMatching=false;
+
public JalviewDataset()
{
seqDetails = new Hashtable();