import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceI;
import jalview.io.VamsasAppDatastore;
+
import uk.ac.vamsas.objects.core.DataSet;
import uk.ac.vamsas.objects.core.DbRef;
import uk.ac.vamsas.objects.core.Sequence;
for (int sf = 0; sf < sfSize; sf++)
{
- modified |= new jalview.io.vamsas.Sequencefeature(datastore,
- (jalview.datamodel.SequenceFeature) sq
- .getSequenceFeatures()[sf], dataset,
+ modified |= new Sequencefeature(datastore,
+ sq.getSequenceFeatures()[sf], dataset,
(Sequence) vobj).docWasUpdated();
}
}
// jalview.datamodel.DBRefEntry dbentry;
for (int db = 0; db < entries.length; db++)
{
- modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
+ modifiedthedoc |= new Dbref(datastore,
// dbentry =
entries[db], sq, (Sequence) vobj, dataset).docWasUpdated();
// DbRef dbentry;
for (int db = 0; db < entries.length; db++)
{
- modifiedtheseq |= new jalview.io.vamsas.Dbref(datastore,
+ modifiedtheseq |= new Dbref(datastore,
// dbentry =
entries[db], vsq, sq).jvWasUpdated();
}