*/
package jalview.io.vamsas;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceI;
import jalview.io.VamsasAppDatastore;
}
else
{
- Cache.debug(
+ Console.debug(
"Ignoring mapless DbRef.Map " + jvobj.getSrcAccString());
}
// TODO: Jalview ignores all the other maps
if (vobj.getMapCount() > 1)
{
- Cache.debug("Ignoring additional mappings on DbRef: "
- + jvobj.getSource() + ":" + jvobj.getAccessionId());
+ Console.debug("Ignoring additional mappings on DbRef: "
+ + jvobj.getSource() + ":" + jvobj.getAccessionId());
}
jalview.datamodel.Mapping mp = new jalview.datamodel.Mapping(
parsemapType(vobj.getMap(0)));
{
DbRef vobj = (DbRef) this.vobj;
DBRefEntry jvobj = (DBRefEntry) this.jvobj;
- Cache.debug("Conflict in dbentry update for " + vobj.getAccessionId()
- + vobj.getSource() + " " + vobj.getVorbaId());
+ Console.debug("Conflict in dbentry update for " + vobj.getAccessionId()
+ + vobj.getSource() + " " + vobj.getVorbaId());
// TODO Auto-generated method stub
}
// TODO: Jalview ignores all the other maps
if (vobj.getMapCount() > 1)
{
- Cache.debug("Ignoring additional mappings on DbRef: "
- + jvobj.getSource() + ":" + jvobj.getAccessionId());
+ Console.debug("Ignoring additional mappings on DbRef: "
+ + jvobj.getSource() + ":" + jvobj.getAccessionId());
}
jalview.datamodel.Mapping mp = new jalview.datamodel.Mapping(
parsemapType(vobj.getMap(0)));
}
else
{
- Cache.debug(
+ Console.debug(
"Ignoring mapless DbRef.Map " + jvobj.getSrcAccString());
}
}