/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
import jalview.util.UrlLink;
import java.util.Enumeration;
+import java.util.Iterator;
import java.util.Vector;
import uk.ac.vamsas.objects.core.DataSetAnnotations;
doJvUpdate();
}
+ @Override
public void addToDocument()
{
DataSetAnnotations dsa = (DataSetAnnotations) vobj;
dataset.addDataSetAnnotations(dsa);
}
+ @Override
public void addFromDocument()
{
DataSetAnnotations dsa = (DataSetAnnotations) vobj;
bindjvvobj(sf, dsa);
}
+ @Override
public void conflict()
{
log.warn("Untested sequencefeature conflict code");
addToDocument(); // and create a new feature in the document
}
+ @Override
public void updateToDoc()
{
DataSetAnnotations dsa = (DataSetAnnotations) vobj;
}
+ @Override
public void updateFromDoc()
{
DataSetAnnotations dsa = (DataSetAnnotations) vobj;
}
if (feature.otherDetails != null)
{
- Enumeration iter = feature.otherDetails.keys();
+ Iterator<String> iter = feature.otherDetails.keySet().iterator();
Vector props = dsa.getPropertyAsReference();
- while (iter.hasMoreElements())
+ while (iter.hasNext())
{
- String key = (String) iter.nextElement();
+ String key = iter.next();
if (!key.equalsIgnoreCase("score")
&& !key.equalsIgnoreCase("status"))
{