import jalview.datamodel.SequenceI;
import jalview.ext.ensembl.EnsemblMap;
import jalview.ext.htsjdk.VCFReader;
+import jalview.io.gff.Gff3Helper;
import jalview.io.gff.SequenceOntologyI;
import jalview.util.MapList;
import jalview.util.MappingUtils;
SequenceFeature sf = new SequenceFeature(type, alleles, featureStart,
featureEnd, score, "VCF");
- sf.setValue("alleles", alleles);
+ sf.setValue(Gff3Helper.ALLELES, alleles);
Map<String, Object> atts = variant.getAttributes();
for (Entry<String, Object> att : atts.entrySet())