JAL-3696 log the error message from the exception to the console

[jalview.git] / src / jalview / io / vcf / VCFLoader.java

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index a44ee26..f4ffc0c 100644 (file)
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -680,7 +680,7 @@ public class VCFLoader
    */
   protected void transferAddedFeatures(SequenceI seq)
   {
-    DBRefEntry[] dbrefs = seq.getDBRefs();
+    List<DBRefEntry> dbrefs = seq.getDBRefs();
     if (dbrefs == null)
     {
       return;
@@ -912,7 +912,7 @@ public class VCFLoader
          * RuntimeException throwable by htsjdk
          */
         String msg = String.format("Error reading VCF for %s:%d-%d: %s ",
-                map.chromosome, vcfStart, vcfEnd);
+                map.chromosome, vcfStart, vcfEnd,e.getLocalizedMessage());
         Cache.log.error(msg);
       }
     }