+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.javascript;
-import java.util.ArrayList;
-import java.util.Enumeration;
-
+import jalview.api.JalviewApp;
import jalview.appletgui.AlignFrame;
-import jalview.appletgui.AlignViewport;
-import jalview.bin.JalviewLite;
import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SequenceGroup;
import jalview.structure.SelectionSource;
-import netscape.javascript.JSObject;
-public class JsSelectionSender implements
- jalview.structure.SelectionListener, JsCallBack
+public class JsSelectionSender extends JSFunctionExec
+ implements jalview.structure.SelectionListener, JsCallBack
{
- JalviewLite jvlite;
AlignFrame _af;
String _listener;
- public JsSelectionSender(JalviewLite jvlite, AlignFrame af,
- String listener)
+ public JsSelectionSender(JalviewApp jvlite, AlignFrame af,
+ String listener, boolean debug)
{
- this.jvlite = jvlite;
+ super(jvlite, debug);
_af = af;
_listener = listener;
}
@Override
public void selection(SequenceGroup seqsel, ColumnSelection colsel,
- SelectionSource source)
+ HiddenColumns hidden, SelectionSource source)
{
- // System.err.println("Testing selection event relay to jsfunction:"+_listener);
+ Object[] info = jvlite.getSelectionForListener(seqsel, colsel, hidden, source, _af);
try
{
- String setid = "";
- String viewid = "";
- AlignFrame src = _af;
- // filter events if necessary
- if (source instanceof AlignViewport)
- {
- if (_af != null
- && !_af.alignPanel.av.getSequenceSetId().equals(
- ((AlignViewport) source).getSequenceSetId()))
- {
- return;
- }
- jalview.appletgui.AlignmentPanel[] aps = jalview.appletgui.PaintRefresher
- .getAssociatedPanels(setid = ((AlignViewport) source)
- .getSequenceSetId());
- for (int a = 0; a < aps.length; a++)
- {
- if (aps[a].av == source)
- {
- src = aps[a].alignFrame;
- }
- }
- }
- else
- {
- // unhandled!
- System.err.println("Unhandled selection source !");
- return;
- }
- JSObject jsoWindow = JSObject.getWindow(jvlite);
- String[] seqs = new String[]
- {};
- String[] cols = new String[]
- {};
- int strt = 0, end = src.alignPanel.av.getAlignment().getWidth();
- if (seqsel != null && seqsel.getSize() > 0)
- {
- seqs = new String[seqsel.getSize()];
- for (int i = 0; i < seqs.length; i++)
- {
- seqs[i] = seqsel.getSequenceAt(i).getName();
- }
- if (strt < seqsel.getStartRes())
- {
- strt = seqsel.getStartRes();
- }
- if (end > seqsel.getEndRes())
- {
- end = seqsel.getEndRes();
- }
- }
- if (colsel != null && colsel.size() > 0)
- {
- cols = new String[colsel.getSelected().size()];
- int d = 0, r = -1;
- for (int i = 0; i < cols.length; i++)
- {
- cols[i] = ""+(1+((Integer)colsel.getSelected().elementAt(i)).intValue());
- }
- }
- else
- {
- if (seqsel != null && seqsel.getSize() > 0)
- {
- // send a valid range, otherwise we send the empty selection
- cols = new String[2];
- cols[0] = "" + (1 + strt) + "-" + (1 + end);
- }
- ;
- }
System.err.println("Relaying selection to jsfunction:" + _listener);
- jsoWindow.call(
- _listener,
- new Object[]
- { src, setid, jvlite.arrayToSeparatorList(seqs),
- jvlite.arrayToSeparatorList(cols) });
+ executeJavascriptFunction(_listener, info);
+
} catch (Exception ex)
{
- System.err
- .println("Jalview Javascript exec error: Couldn't send selection message using function '"
+ System.err.println(
+ "Jalview Javascript exec error: Couldn't send selection message using function '"
+ _listener + "'");
+ ex.printStackTrace();
if (ex instanceof netscape.javascript.JSException)
{
- System.err.println("Javascript Exception: "+((netscape.javascript.JSException)ex).getMessage());
+ System.err.println("Javascript Exception: "
+ + ((netscape.javascript.JSException) ex).getCause()
+ .toString());
}
- else {
- ex.printStackTrace();
- };
+
}
+
}
@Override