+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.javascript;
-import java.util.ArrayList;
-import java.util.Enumeration;
-
import jalview.appletgui.AlignFrame;
-import jalview.appletgui.AlignViewport;
import jalview.bin.JalviewLite;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.SequenceGroup;
import jalview.structure.SelectionSource;
-import netscape.javascript.JSObject;
-public class JsSelectionSender implements
+public class JsSelectionSender extends JSFunctionExec implements
jalview.structure.SelectionListener, JsCallBack
{
- JalviewLite jvlite;
AlignFrame _af;
public JsSelectionSender(JalviewLite jvlite, AlignFrame af,
String listener)
{
- this.jvlite = jvlite;
+ super(jvlite);
_af = af;
_listener = listener;
}
String setid = "";
String viewid = "";
AlignFrame src = _af;
- // filter events if necessary
- if (source instanceof AlignViewport)
+ if (source != null)
{
- if (_af != null
- && !_af.alignPanel.av.getSequenceSetId().equals(
- ((AlignViewport) source).getSequenceSetId()))
- {
- return;
- }
- jalview.appletgui.AlignmentPanel[] aps = jalview.appletgui.PaintRefresher
- .getAssociatedPanels(setid = ((AlignViewport) source)
- .getSequenceSetId());
- for (int a = 0; a < aps.length; a++)
+ if (source instanceof jalview.appletgui.AlignViewport
+ && ((jalview.appletgui.AlignViewport) source).applet.currentAlignFrame.viewport == source)
{
- if (aps[a].av == source)
- {
- src = aps[a].alignFrame;
- }
+ // should be valid if it just generated an event!
+ src = ((jalview.appletgui.AlignViewport) source).applet.currentAlignFrame;
+
}
}
- else
- {
- // unhandled!
- System.err.println("Unhandled selection source !");
- return;
- }
- JSObject jsoWindow = JSObject.getWindow(jvlite);
String[] seqs = new String[]
{};
String[] cols = new String[]
{};
- int strt = 0, end = src.alignPanel.av.getAlignment().getWidth();
+ int strt = 0, end = (src == null) ? -1 : src.alignPanel.av
+ .getAlignment().getWidth();
if (seqsel != null && seqsel.getSize() > 0)
{
seqs = new String[seqsel.getSize()];
{
strt = seqsel.getStartRes();
}
- if (end > seqsel.getEndRes())
+ if (end == -1 || end > seqsel.getEndRes())
{
end = seqsel.getEndRes();
}
}
if (colsel != null && colsel.size() > 0)
{
+ if (end == -1)
+ {
+ end = colsel.getMax() + 1;
+ }
cols = new String[colsel.getSelected().size()];
int d = 0, r = -1;
for (int i = 0; i < cols.length; i++)
{
- cols[i] = ""+(1+((Integer)colsel.getSelected().elementAt(i)).intValue());
+ cols[i] = ""
+ + (1 + ((Integer) colsel.getSelected().elementAt(i))
+ .intValue());
}
}
else
}
System.err.println("Relaying selection to jsfunction:" + _listener);
- jsoWindow.call(
+ executeJavascriptFunction(
_listener,
new Object[]
{ src, setid, jvlite.arrayToSeparatorList(seqs),
System.err
.println("Jalview Javascript exec error: Couldn't send selection message using function '"
+ _listener + "'");
+ ex.printStackTrace();
if (ex instanceof netscape.javascript.JSException)
{
- System.err.println("Javascript Exception: "+((netscape.javascript.JSException)ex).getMessage());
+ System.err.println("Javascript Exception: "
+ + ((netscape.javascript.JSException) ex).getCause()
+ .toString());
}
- else {
- ex.printStackTrace();
- };
+
}
}