JAL-2089 patch broken merge to master for Release 2.10.0b1

[jalview.git] / src / jalview / javascript / JsSelectionSender.java

diff --git a/src/jalview/javascript/JsSelectionSender.java b/src/jalview/javascript/JsSelectionSender.java
index e4a0916..dc08b59 100644 (file)
--- a/src/jalview/javascript/JsSelectionSender.java
+++ b/src/jalview/javascript/JsSelectionSender.java
@@ -50,7 +50,6 @@ public class JsSelectionSender extends JSFunctionExec implements
     try
     {
       String setid = "";
-      String viewid = "";
       AlignFrame src = _af;
       if (source != null)
       {
@@ -62,10 +61,8 @@ public class JsSelectionSender extends JSFunctionExec implements
 
         }
       }
-      String[] seqs = new String[]
-      {};
-      String[] cols = new String[]
-      {};
+      String[] seqs = new String[] {};
+      String[] cols = new String[] {};
       int strt = 0, end = (src == null) ? -1 : src.alignPanel.av
               .getAlignment().getWidth();
       if (seqsel != null && seqsel.getSize() > 0)
@@ -84,19 +81,16 @@ public class JsSelectionSender extends JSFunctionExec implements
           end = seqsel.getEndRes();
         }
       }
-      if (colsel != null && colsel.size() > 0)
+      if (colsel != null && !colsel.isEmpty())
       {
         if (end == -1)
         {
           end = colsel.getMax() + 1;
         }
         cols = new String[colsel.getSelected().size()];
-        int d = 0, r = -1;
         for (int i = 0; i < cols.length; i++)
         {
-          cols[i] = ""
-                  + (1 + ((Integer) colsel.getSelected().elementAt(i))
-                          .intValue());
+          cols[i] = "" + (1 + colsel.getSelected().get(i).intValue());
         }
       }
       else
@@ -111,10 +105,8 @@ public class JsSelectionSender extends JSFunctionExec implements
 
       }
       System.err.println("Relaying selection to jsfunction:" + _listener);
-      executeJavascriptFunction(
-              _listener,
-              new Object[]
-              { src, setid, jvlite.arrayToSeparatorList(seqs),
+      executeJavascriptFunction(_listener,
+              new Object[] { src, setid, jvlite.arrayToSeparatorList(seqs),
                   jvlite.arrayToSeparatorList(cols) });
     } catch (Exception ex)
     {