/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
import jalview.structure.StructureMapping;
import jalview.structure.StructureMappingcommandSet;
import jalview.structure.StructureSelectionManager;
+import jalview.util.HttpUtils;
import java.util.ArrayList;
import java.util.List;
{
for (int i = 0; i < modelSet.length; i++)
{
- // resolve a real filename
- try
- {
- if (new java.net.URL(modelSet[i]).openConnection() != null)
- {
- continue;
- }
- } catch (Exception x)
- {
- }
- ;
- try
- {
- String db = jvlite.getDocumentBase().toString();
- db = db.substring(0, db.lastIndexOf("/"));
- if (new java.net.URL(db + "/" + modelSet[i]).openConnection() != null)
- {
- modelSet[i] = db + "/" + modelSet[i];
- continue;
- }
- } catch (Exception x)
- {
- }
- ;
- try
- {
- if (new java.net.URL(jvlite.getCodeBase() + modelSet[i])
- .openConnection() != null)
- {
- modelSet[i] = jvlite.getCodeBase() + modelSet[i];
- continue;
- }
- } catch (Exception x)
- {
- }
- ;
-
+ modelSet[i] = resolveModelFile(modelSet[i]);
}
}
}
+ /**
+ * Returns the first out of: file, file prefixed by document base, or file
+ * prefixed by codebase which can be resolved to a valid URL. If none can,
+ * returns the input parameter value.
+ *
+ * @param file
+ */
+ public String resolveModelFile(String file)
+ {
+ // TODO reuse JalviewLite.LoadingThread.addProtocol instead
+ if (HttpUtils.isValidUrl(file))
+ {
+ return file;
+ }
+
+ String db = jvlite.getDocumentBase().toString();
+ db = db.substring(0, db.lastIndexOf("/"));
+ String docBaseFile = db + "/" + file;
+ if (HttpUtils.isValidUrl(docBaseFile))
+ {
+ return docBaseFile;
+ }
+
+ String cb = jvlite.getCodeBase() + file;
+ if (HttpUtils.isValidUrl(cb))
+ {
+ return cb;
+ }
+
+ return file;
+ }
+
@Override
public String[] getPdbFile()
{
return _listenerfn;
}
- public void finalise()
+ public void finalize() throws Throwable
{
jvlite = null;
super.finalize();