public JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem();\r
JMenuItem createPNG = new JMenuItem();\r
protected JMenuItem font = new JMenuItem();\r
- public JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem();\r
+ public JCheckBoxMenuItem seqLimits = new JCheckBoxMenuItem();\r
JMenuItem epsFile = new JMenuItem();\r
JMenuItem LoadtreeMenuItem = new JMenuItem();\r
public JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem();\r
JMenuItem vamsasStore = new JMenuItem();\r
protected JCheckBoxMenuItem showTranslation = new JCheckBoxMenuItem();\r
protected JTabbedPane tabbedPane = new JTabbedPane();\r
- protected JMenuItem featureSettings = new JMenuItem();\r
+ public JMenuItem featureSettings = new JMenuItem();\r
+ public JCheckBoxMenuItem seqDBRef = new JCheckBoxMenuItem();\r
+ JMenuItem fetchSequence = new JMenuItem();\r
\r
public GAlignFrame()\r
{\r
font_actionPerformed(e);\r
}\r
});\r
- fullSeqId.setText("Show Full Sequence ID");\r
- fullSeqId.setState( jalview.bin.Cache.getDefault("SHOW_FULL_ID",true));\r
- fullSeqId.addActionListener(new java.awt.event.ActionListener()\r
+\r
+ seqLimits.setText("Show Sequence Limits");\r
+ seqLimits.setState( jalview.bin.Cache.getDefault("SHOW_JVSUFFIX",true));\r
+ seqLimits.addActionListener(new java.awt.event.ActionListener()\r
{\r
public void actionPerformed(ActionEvent e)\r
{\r
- fullSeqId_actionPerformed(e);\r
+ seqLimit_actionPerformed(e);\r
}\r
});\r
epsFile.setText("EPS");\r
tabSelected();\r
}\r
});\r
-// featureSettings.setEnabled(false);\r
+ featureSettings.setEnabled(false);\r
featureSettings.setText("Feature Settings...");\r
featureSettings.addActionListener(new ActionListener()\r
{\r
featureSettings_actionPerformed(e);\r
}\r
});\r
+ seqDBRef.setState( jalview.bin.Cache.getDefault("SHOW_DBPREFIX",true));\r
+ seqDBRef.setText("Show Full Sequence Id");\r
+ seqDBRef.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ seqDBRef_actionPerformed(e);\r
+ }\r
+ });\r
+ fetchSequence.setText("Fetch Sequence...");\r
+ fetchSequence.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ fetchSequence_actionPerformed(e);\r
+ }\r
+ });\r
alignFrameMenuBar.add(fileMenu);\r
alignFrameMenuBar.add(editMenu);\r
alignFrameMenuBar.add(searchMenu);\r
alignFrameMenuBar.add(colourMenu);\r
alignFrameMenuBar.add(calculateMenu);\r
alignFrameMenuBar.add(webService);\r
+ fileMenu.add(fetchSequence);\r
fileMenu.add(vamsasStore);\r
fileMenu.add(saveAlignmentMenu);\r
fileMenu.add(jMenu2);\r
viewMenu.add(font);\r
viewMenu.addSeparator();\r
viewMenu.add(wrapMenuItem);\r
- viewMenu.add(fullSeqId);\r
+ viewMenu.add(seqDBRef);\r
+ viewMenu.add(seqLimits);\r
viewMenu.add(scaleAbove);\r
viewMenu.add(scaleLeft);\r
viewMenu.add(scaleRight);\r
{\r
}\r
\r
- protected void fullSeqId_actionPerformed(ActionEvent e)\r
+ protected void seqLimit_actionPerformed(ActionEvent e)\r
{\r
}\r
\r
+ public void seqDBRef_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+\r
public void createEPS(java.io.File f)\r
{\r
}\r
{\r
\r
}\r
+\r
+ public void fetchSequence_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
}\r