JAL-2629 add documentation to previous work

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 518c51a..2a9278e 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -1959,8 +1959,7 @@ public class GAlignFrame extends JInternalFrame
   }
 
   /**
-   * Constructs the entries on the Colour menu (but does not add them to the
-   * menu).
+   * Constructs the entries on the HMMER menu (does not add them to the menu).
    */
   protected void initHMMERMenu()
   {
@@ -1968,6 +1967,11 @@ public class GAlignFrame extends JInternalFrame
     hmmBuild = new JMenuItem(MessageManager.getString("label.hmmbuild"));
     hmmSearch = new JMenuItem(MessageManager.getString("label.hmmsearch"));
   }
+
+  /**
+   * Constructs the entries on the Colour menu (but does not add them to the
+   * menu).
+   */
   protected void initColourMenu()
   {
     applyToAllGroups = new JCheckBoxMenuItem(
@@ -2792,13 +2796,11 @@ public class GAlignFrame extends JInternalFrame
 
   protected void showHMMSequenceLogo_actionPerformed(ActionEvent e)
   {
-    // TODO Auto-generated method stub
 
   }
 
   protected void normaliseHMMSequenceLogo_actionPerformed(ActionEvent e)
   {
-    // TODO Auto-generated method stub
 
   }
 }