protected JMenuItem sortIDMenuItem = new JMenuItem();
+ protected JMenuItem sortLengthMenuItem = new JMenuItem();
+
protected JMenuItem sortGroupMenuItem = new JMenuItem();
protected JMenu sortByAnnotScore = new JMenu();
public JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem();
public JCheckBoxMenuItem showSeqFeatures = new JCheckBoxMenuItem();
+ public JCheckBoxMenuItem showSeqFeaturesHeight = new JCheckBoxMenuItem();
protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem();
JMenuItem alignmentProperties = new JMenuItem();
JMenu tooltipSettingsMenu = new JMenu();
+
+ private JMenuItem justifyLeftMenuItem=new JMenuItem();
+
+ private JMenuItem justifyRightMenuItem=new JMenuItem();
public GAlignFrame()
{
removeAllGapsMenuItem_actionPerformed(e);
}
});
+ justifyLeftMenuItem.setText("Left Justify Alignment");
+ justifyLeftMenuItem.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ justifyLeftMenuItem_actionPerformed(e);
+ }
+ });
+ justifyRightMenuItem.setText("Right Justify Alignment");
+ justifyRightMenuItem.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ justifyRightMenuItem_actionPerformed(e);
+ }
+ });
viewBoxesMenuItem.setText("Boxes");
viewBoxesMenuItem.setState(true);
viewBoxesMenuItem.addActionListener(new java.awt.event.ActionListener()
sortIDMenuItem_actionPerformed(e);
}
});
+ sortLengthMenuItem.setText("By Length");
+ sortLengthMenuItem.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ sortLengthMenuItem_actionPerformed(e);
+ }
+ });
sortGroupMenuItem.setText("by Group");
sortGroupMenuItem.addActionListener(new java.awt.event.ActionListener()
{
showSeqFeatures_actionPerformed(actionEvent);
}
});
+ showSeqFeaturesHeight.setText("Vary Sequence Feature Height");
+ showSeqFeaturesHeight.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ showSeqFeaturesHeight_actionPerformed(actionEvent);
+ }
+ });
showDbRefsMenuitem.setText("Show Database Refs");
showDbRefsMenuitem.addActionListener(new ActionListener()
{
editMenu.add(removeAllGapsMenuItem);
editMenu.add(removeRedundancyMenuItem);
editMenu.addSeparator();
+ editMenu.add(justifyLeftMenuItem);
+ editMenu.add(justifyRightMenuItem);
+ editMenu.addSeparator();
editMenu.add(padGapsMenuitem);
viewMenu.add(newView);
viewMenu.add(expandViews);
viewMenu.add(annotationPanelMenuItem);
viewMenu.addSeparator();
viewMenu.add(showSeqFeatures);
+ viewMenu.add(showSeqFeaturesHeight);
+
viewMenu.add(featureSettings);
tooltipSettingsMenu.add(showDbRefsMenuitem);
tooltipSettingsMenu.add(showNpFeatsMenuitem);
pasteMenu.add(pasteNew);
pasteMenu.add(pasteThis);
sort.add(sortIDMenuItem);
+ sort.add(sortLengthMenuItem);
sort.add(sortGroupMenuItem);
sort.add(sortPairwiseMenuItem);
sort.add(sortByTreeMenu);
selectMenu.add(deleteGroups);
}
+ protected void showSeqFeaturesHeight_actionPerformed(
+ ActionEvent actionEvent)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void justifyRightMenuItem_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void justifyLeftMenuItem_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
protected void followHighlight_actionPerformed()
{
// TODO Auto-generated method stub
{
}
+ protected void sortLengthMenuItem_actionPerformed(ActionEvent e)
+ {
+ }
+
protected void sortGroupMenuItem_actionPerformed(ActionEvent e)
{
}