protected JMenu fileMenu = new JMenu();\r
protected JMenuItem closeMenuItem = new JMenuItem();\r
protected JMenu editMenu = new JMenu();\r
- protected JMenu fontMenu = new JMenu();\r
protected JMenu viewMenu = new JMenu();\r
protected JMenu colourMenu = new JMenu();\r
protected JMenu calculateMenu = new JMenu();\r
protected JMenuItem removeGappedColumnMenuItem = new JMenuItem();\r
protected JMenuItem removeAllGapsMenuItem = new JMenuItem();\r
protected JMenuItem setGapCharMenuItem = new JMenuItem();\r
- protected JMenuItem fontNameMenuItem = new JMenuItem();\r
- protected JMenuItem fontSizeMenuItem = new JMenuItem();\r
- protected JMenuItem fontStyleMenuItem = new JMenuItem();\r
protected JCheckBoxMenuItem viewBoxesMenuItem = new JCheckBoxMenuItem();\r
protected JCheckBoxMenuItem viewTextMenuItem = new JCheckBoxMenuItem();\r
protected JMenuItem sortPairwiseMenuItem = new JMenuItem();\r
protected JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem();\r
JRadioButtonMenuItem noColourmenuItem = new JRadioButtonMenuItem();\r
protected JCheckBoxMenuItem wrapMenuItem = new JCheckBoxMenuItem();\r
- JMenuItem pdbTest = new JMenuItem();\r
JMenuItem printMenuItem = new JMenuItem();\r
protected JCheckBoxMenuItem renderGapsMenuItem = new JCheckBoxMenuItem();\r
JMenuItem findMenuItem = new JMenuItem();\r
JMenu searchMenu = new JMenu();\r
protected JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem();\r
- protected JCheckBoxMenuItem secondaryStructure = new JCheckBoxMenuItem();\r
+ protected JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem();\r
protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem();\r
JMenuItem deleteGroups = new JMenuItem();\r
+ JMenuItem delete = new JMenuItem();\r
+ JMenuItem copy = new JMenuItem();\r
+ JMenuItem cut = new JMenuItem();\r
+ JMenu jMenu1 = new JMenu();\r
+ JMenuItem pasteNew = new JMenuItem();\r
+ JMenuItem pasteThis = new JMenuItem();\r
+ protected JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem();\r
+ JMenuItem createPNG = new JMenuItem();\r
+ protected JMenuItem font = new JMenuItem();\r
+ protected JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem();\r
+ JMenuItem epsFile = new JMenuItem();\r
public GAlignFrame()\r
{\r
\r
}\r
});\r
editMenu.setText("Edit");\r
- fontMenu.setText("Font");\r
viewMenu.setText("View");\r
colourMenu.setText("Colour");\r
calculateMenu.setText("Calculate");\r
alignMenu.setText("Web Service");\r
+ groupsMenuItem.setVisible(false);\r
groupsMenuItem.setText("Groups");\r
groupsMenuItem.addActionListener(new java.awt.event.ActionListener()\r
{\r
setGapCharMenuItem_actionPerformed(e);\r
}\r
});\r
- fontNameMenuItem.addActionListener(new java.awt.event.ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- fontNameMenuItem_actionPerformed(e);\r
- }\r
- });\r
- fontSizeMenuItem.setText("10");\r
- fontSizeMenuItem.addActionListener(new java.awt.event.ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- fontSizeMenuItem_actionPerformed(e);\r
- }\r
- });\r
- fontStyleMenuItem.setText("Plain");\r
- fontStyleMenuItem.addActionListener(new java.awt.event.ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- fontStyleMenuItem_actionPerformed(e);\r
- }\r
- });\r
viewBoxesMenuItem.setText("Boxes");\r
viewBoxesMenuItem.setState(true);\r
viewBoxesMenuItem.addActionListener(new java.awt.event.ActionListener()\r
noColourmenuItem_actionPerformed(e);\r
}\r
});\r
- wrapMenuItem.setEnabled(false);\r
wrapMenuItem.setText("Wrap alignment");\r
wrapMenuItem.addActionListener(new java.awt.event.ActionListener()\r
{\r
wrapMenuItem_actionPerformed(e);\r
}\r
});\r
- pdbTest.setText("PDB Test Viewer");\r
- pdbTest.addActionListener(new java.awt.event.ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- pdbTest_actionPerformed(e);\r
- }\r
- });\r
printMenuItem.setText("Print");\r
printMenuItem.addActionListener(new java.awt.event.ActionListener()\r
{\r
abovePIDThreshold_actionPerformed(e);\r
}\r
});\r
- secondaryStructure.setSelected(true);\r
- secondaryStructure.setText("Secondary Structure");\r
- secondaryStructure.addActionListener(new ActionListener()\r
+ sequenceFeatures.setText("Sequence Features");\r
+ sequenceFeatures.addActionListener(new ActionListener()\r
{\r
public void actionPerformed(ActionEvent actionEvent)\r
{\r
- secondaryStructure_actionPerformed(actionEvent);\r
+ sequenceFeatures_actionPerformed(actionEvent);\r
}\r
});\r
nucleotideColour.setText("Nucleotide colours");\r
deleteGroups_actionPerformed(e);\r
}\r
});\r
+ copy.setText("Copy");\r
+ copy.setMnemonic(KeyEvent.VK_C);\r
+\r
+ copy.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ copy_actionPerformed(e);\r
+ }\r
+ });\r
+ cut.setText("Cut");\r
+ cut.setMnemonic(KeyEvent.VK_X);\r
+ cut.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ cut_actionPerformed(e);\r
+ }\r
+ });\r
+ delete.setText("Delete");\r
+ delete.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ delete_actionPerformed(e);\r
+ }\r
+ });\r
+ jMenu1.setMnemonic('V');\r
+ jMenu1.setText("Paste");\r
+ pasteNew.setText("to new alignment");\r
+ pasteNew.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ pasteNew_actionPerformed(e);\r
+ }\r
+ });\r
+ pasteThis.setText("add to this alignment");\r
+ pasteThis.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ pasteThis_actionPerformed(e);\r
+ }\r
+ });\r
+ applyToAllGroups.setText("Apply colour to all groups");\r
+ applyToAllGroups.setState(true);\r
+ applyToAllGroups.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ applyToAllGroups_actionPerformed(e);\r
+ }\r
+ });\r
+ createPNG.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ createPNG_actionPerformed(e);\r
+ }\r
+ });\r
+ createPNG.setActionCommand("Save as PNG Image");\r
+ createPNG.setText("Save as PNG Image");\r
+ font.setText("Change Font");\r
+ font.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ font_actionPerformed(e);\r
+ }\r
+ });\r
+ fullSeqId.setText("Show full sequence id");\r
+ fullSeqId.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ fullSeqId_actionPerformed(e);\r
+ }\r
+ });\r
+ epsFile.setText("Save as EPS file");\r
+ epsFile.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ epsFile_actionPerformed(e);\r
+ }\r
+ });\r
alignFrameMenuBar.add(fileMenu);\r
alignFrameMenuBar.add(editMenu);\r
alignFrameMenuBar.add(searchMenu);\r
- alignFrameMenuBar.add(fontMenu);\r
alignFrameMenuBar.add(viewMenu);\r
alignFrameMenuBar.add(colourMenu);\r
alignFrameMenuBar.add(calculateMenu);\r
fileMenu.add(saveAlignmentMenu);\r
fileMenu.add(outputTextboxMenu);\r
fileMenu.add(htmlMenuItem);\r
+ fileMenu.add(epsFile);\r
+ fileMenu.add(createPNG);\r
fileMenu.add(printMenuItem);\r
fileMenu.addSeparator();\r
fileMenu.add(closeMenuItem);\r
+ editMenu.add(copy);\r
+ editMenu.add(jMenu1);\r
+ editMenu.add(cut);\r
+ editMenu.add(delete);\r
+ editMenu.addSeparator();\r
editMenu.add(undoMenuItem);\r
editMenu.add(redoMenuItem);\r
editMenu.addSeparator();\r
editMenu.add(removeAllGapsMenuItem);\r
editMenu.add(setGapCharMenuItem);\r
searchMenu.add(findMenuItem);\r
- fontMenu.add(fontNameMenuItem);\r
- fontMenu.add(fontSizeMenuItem);\r
- fontMenu.add(fontStyleMenuItem);\r
+ viewMenu.add(font);\r
+ viewMenu.add(fullSeqId);\r
viewMenu.add(wrapMenuItem);\r
viewMenu.add(viewBoxesMenuItem);\r
viewMenu.add(viewTextMenuItem);\r
viewMenu.add(renderGapsMenuItem);\r
viewMenu.add(consensusGraphMenuItem);\r
viewMenu.add(overviewMenuItem);\r
- viewMenu.add(secondaryStructure);\r
+ viewMenu.add(sequenceFeatures);\r
+ colourMenu.add(applyToAllGroups);\r
colourMenu.add(noColourmenuItem);\r
colourMenu.add(clustalColour);\r
colourMenu.add(zappoColour);\r
calculateMenu.add(avDistanceTreeBlosumMenuItem);\r
calculateMenu.add(njTreeBlosumMenuItem);\r
alignMenu.add(clustalAlignMenuItem);\r
- alignMenu.add(pdbTest);\r
this.getContentPane().add(statusBar, BorderLayout.SOUTH);\r
+ jMenu1.add(pasteNew);\r
+ jMenu1.add(pasteThis);\r
}\r
\r
protected void saveAs_actionPerformed(ActionEvent e)\r
}\r
\r
\r
- protected void fontNameMenuItem_actionPerformed(ActionEvent e)\r
- {\r
-\r
- }\r
-\r
- protected void fontSizeMenuItem_actionPerformed(ActionEvent e)\r
- {\r
-\r
- }\r
\r
- protected void fontStyleMenuItem_actionPerformed(ActionEvent e)\r
- {\r
\r
- }\r
\r
protected void wrapMenuItem_actionPerformed(ActionEvent e)\r
{\r
\r
}\r
\r
- protected void pdbTest_actionPerformed(ActionEvent e)\r
- {\r
-\r
- }\r
\r
protected void printMenuItem_actionPerformed(ActionEvent e)\r
{\r
\r
}\r
\r
- public void secondaryStructure_actionPerformed(ActionEvent actionEvent)\r
+ public void sequenceFeatures_actionPerformed(ActionEvent actionEvent)\r
{\r
\r
}\r
\r
}\r
\r
+ protected void copy_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+\r
+ protected void cut_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void delete_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void pasteNew_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void pasteThis_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void applyToAllGroups_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void createPNG_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void font_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void fullSeqId_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ protected void epsFile_actionPerformed(ActionEvent e)\r
+ {\r
+\r
+ }\r
+\r
+\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff