import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
import jalview.api.SplitContainerI;
import jalview.bin.Cache;
+import jalview.bin.Jalview;
import jalview.gui.JvSwingUtils;
import jalview.gui.Preferences;
import jalview.io.FileFormats;
protected JCheckBoxMenuItem hiddenMarkers = new JCheckBoxMenuItem();
- protected JTabbedPane tabbedPane = jalview.jbgui.swing.JTabbedPane.createTabbedPane();
+ protected JTabbedPane tabbedPane = jalview.jbgui.GDesktop.createTabbedPane();
protected JMenuItem reload = new JMenuItem();
@Override
public void actionPerformed(ActionEvent e)
{
- outputText_actionPerformed(e);
+ outputText_actionPerformed(e.getActionCommand());
}
});
@Override
public void actionPerformed(ActionEvent e)
{
- saveAs_actionPerformed(e);
+ saveAs_actionPerformed();
}
};
addMenuActionAndAccelerator(keyStroke, closeMenuItem, al);
JMenu editMenu = new JMenu(MessageManager.getString("action.edit"));
- JMenu viewMenu = new JMenu(MessageManager.getString("action.view")) {
-
- public void setPopupMenuVisible(boolean b) {
- if (b) {
- openFeatureSettings.setEnabled(haveAlignmentFeatures());
- }
- super.setPopupMenuVisible(b);
- }
-
- };
+ JMenu viewMenu = new JMenu(MessageManager.getString("action.view"));
JMenu annotationsMenu = new JMenu(
MessageManager.getString("action.annotations"));
JMenu showMenu = new JMenu(MessageManager.getString("action.show"));
openFeatureSettings = new JMenuItem(
MessageManager.getString("action.feature_settings"));
- openFeatureSettings.setEnabled(false);
openFeatureSettings.addActionListener(new ActionListener()
{
@Override
featureSettings_actionPerformed(e);
}
});
+
+ /*
+ * add sub-menu of database we can fetch from
+ */
JMenuItem fetchSequence = new JMenuItem(
MessageManager.getString("label.fetch_sequences"));
fetchSequence.addActionListener(new ActionListener()
@Override
public void actionPerformed(ActionEvent e)
{
- fetchSequence_actionPerformed(e);
+ fetchSequence_actionPerformed();
}
});
alignFrameMenuBar.add(formatMenu);
alignFrameMenuBar.add(colourMenu);
alignFrameMenuBar.add(calculateMenu);
- alignFrameMenuBar.add(webService);
+ if (!Jalview.isJS())
+ {
+ alignFrameMenuBar.add(webService);
+ }
fileMenu.add(fetchSequence);
fileMenu.add(addSequenceMenu);
fileMenu.add(exportAnnotations);
fileMenu.add(loadTreeMenuItem);
fileMenu.add(associatedData);
- /*
- * No VCF import in Jalview-JS
- * @j2sNative
- */
+ if (!Jalview.isJS())
{
fileMenu.add(loadVcf);
}
calculateMenu.addSeparator();
calculateMenu.add(expandAlignment);
calculateMenu.add(extractScores);
- calculateMenu.addSeparator();
- calculateMenu.add(runGroovy);
+ if (!Jalview.isJS())
+ {
+ calculateMenu.addSeparator();
+ calculateMenu.add(runGroovy);
+ }
webServiceNoServices = new JMenuItem(
MessageManager.getString("label.no_services"));
webService.add(webServiceNoServices);
- exportImageMenu.add(htmlMenuItem);
+ if (!Jalview.isJS())
+ {
+ exportImageMenu.add(htmlMenuItem);
+ }
exportImageMenu.add(epsFile);
exportImageMenu.add(createPNG);
exportImageMenu.add(createBioJS);
- exportImageMenu.add(createSVG);
+ if (!Jalview.isJS())
+ {
+ exportImageMenu.add(createSVG);
+ }
addSequenceMenu.add(addFromFile);
addSequenceMenu.add(addFromText);
addSequenceMenu.add(addFromURL);
// selectMenu.add(listenToViewSelections);
}
- protected boolean haveAlignmentFeatures()
- {
- // because gAlignFrame is not an abstract class -- see AlignFrame
- return false;
- }
-
protected void loadVcf_actionPerformed()
{
}
{
}
- protected void outputText_actionPerformed(ActionEvent e)
+ protected void outputText_actionPerformed(String formatName)
{
}
{
}
- protected void saveAs_actionPerformed(ActionEvent e)
+ protected void saveAs_actionPerformed()
{
}
}
- public void fetchSequence_actionPerformed(ActionEvent e)
+ public void fetchSequence_actionPerformed()
{
}