JAL-2629 add sort by evalue and bit score

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 62165cd..579da08 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -518,6 +518,26 @@ public class GAlignFrame extends JInternalFrame
         sortGroupMenuItem_actionPerformed(e);
       }
     });
+    JMenuItem sortEValueMenuItem = new JMenuItem(
+            MessageManager.getString("action.by_evalue"));
+    sortEValueMenuItem.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        sortEValueMenuItem_actionPerformed(e);
+      }
+    });
+    JMenuItem sortBitScoreMenuItem = new JMenuItem(
+            MessageManager.getString("action.by_bit_score"));
+    sortBitScoreMenuItem.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        sortBitScoreMenuItem_actionPerformed(e);
+      }
+    });
   
     JMenuItem removeRedundancyMenuItem = new JMenuItem(
             MessageManager.getString("action.remove_redundancy"));
@@ -1899,6 +1919,8 @@ public class GAlignFrame extends JInternalFrame
     sort.add(sortLengthMenuItem);
     sort.add(sortGroupMenuItem);
     sort.add(sortPairwiseMenuItem);
+    sort.add(sortEValueMenuItem);
+    sort.add(sortBitScoreMenuItem);
     sort.add(sortByTreeMenu);
     calculateMenu.add(sort);
     calculateMenu.add(calculateTree);
@@ -2544,6 +2566,14 @@ public class GAlignFrame extends JInternalFrame
   {
   }
 
+  protected void sortEValueMenuItem_actionPerformed(ActionEvent e)
+  {
+  }
+
+  protected void sortBitScoreMenuItem_actionPerformed(ActionEvent e)
+  {
+  }
+
   protected void removeRedundancyMenuItem_actionPerformed(ActionEvent e)
   {
   }