JMenuItem findMenuItem = new JMenuItem();\r
JMenu searchMenu = new JMenu();\r
protected JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem();\r
- protected JCheckBoxMenuItem secondaryStructure = new JCheckBoxMenuItem();\r
+ protected JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem();\r
protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem();\r
JMenuItem deleteGroups = new JMenuItem();\r
public GAlignFrame()\r
abovePIDThreshold_actionPerformed(e);\r
}\r
});\r
- secondaryStructure.setEnabled(false);\r
- secondaryStructure.setSelected(true);\r
- secondaryStructure.setText("Secondary Structure");\r
- secondaryStructure.addActionListener(new ActionListener()\r
+ sequenceFeatures.setSelected(true);\r
+ sequenceFeatures.setText("Sequence Features");\r
+ sequenceFeatures.addActionListener(new ActionListener()\r
{\r
public void actionPerformed(ActionEvent actionEvent)\r
{\r
- secondaryStructure_actionPerformed(actionEvent);\r
+ sequenceFeatures_actionPerformed(actionEvent);\r
}\r
});\r
nucleotideColour.setText("Nucleotide colours");\r
viewMenu.add(renderGapsMenuItem);\r
viewMenu.add(consensusGraphMenuItem);\r
viewMenu.add(overviewMenuItem);\r
- viewMenu.add(secondaryStructure);\r
+ viewMenu.add(sequenceFeatures);\r
colourMenu.add(noColourmenuItem);\r
colourMenu.add(clustalColour);\r
colourMenu.add(zappoColour);\r
\r
}\r
\r
- public void secondaryStructure_actionPerformed(ActionEvent actionEvent)\r
+ public void sequenceFeatures_actionPerformed(ActionEvent actionEvent)\r
{\r
\r
}\r