Sends gapChar to seqData

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 83bea23..8aa5159 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -136,7 +136,6 @@ public class GAlignFrame
   JMenuItem hideSelSequences = new JMenuItem();\r
   JMenuItem hideSelColumns = new JMenuItem();\r
   protected JCheckBoxMenuItem hiddenMarkers = new JCheckBoxMenuItem();\r
-  JMenu jMenu5 = new JMenu();\r
 \r
   public GAlignFrame()\r
   {\r
@@ -148,7 +147,7 @@ public class GAlignFrame
       setJMenuBar(alignFrameMenuBar);\r
 \r
       // dynamically fill save as menu with available formats\r
-      for (int i = 0; i < jalview.io.FormatAdapter.formats.size(); i++)\r
+      for (int i = 0; i < jalview.io.FormatAdapter.formats.size()-1; i++)\r
       {\r
         JMenuItem item = new JMenuItem( (String) jalview.io.FormatAdapter.formats.\r
                              elementAt(\r
@@ -1078,7 +1077,6 @@ public class GAlignFrame
         hiddenMarkers_actionPerformed(e);\r
       }\r
     });\r
-    jMenu5.setText("Associate Structure With Sequence");\r
 \r
     alignFrameMenuBar.add(fileMenu);\r
     alignFrameMenuBar.add(editMenu);\r
@@ -1096,8 +1094,6 @@ public class GAlignFrame
     fileMenu.add(outputTextboxMenu);\r
     fileMenu.add(printMenuItem);\r
     fileMenu.addSeparator();\r
-    fileMenu.add(jMenu5);\r
-    fileMenu.addSeparator();\r
     fileMenu.add(exportFeatures);\r
     fileMenu.add(exportAnnotations);\r
     fileMenu.add(LoadtreeMenuItem);\r