Alignment Annotation added

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index a256133..8b68899 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -61,7 +61,7 @@ public class GAlignFrame extends JInternalFrame
   protected JRadioButtonMenuItem BLOSUM62Colour = new JRadioButtonMenuItem();
   JMenuItem njTreeBlosumMenuItem = new JMenuItem();
   JMenuItem avDistanceTreeBlosumMenuItem = new JMenuItem();
-  protected JCheckBoxMenuItem consensusGraphMenuItem = new JCheckBoxMenuItem();
+  protected JCheckBoxMenuItem annotationPanelMenuItem = new JCheckBoxMenuItem();
   protected JCheckBoxMenuItem colourTextMenuItem = new JCheckBoxMenuItem();
   JMenuItem htmlMenuItem = new JMenuItem();
   JMenuItem overviewMenuItem = new JMenuItem();
@@ -90,6 +90,7 @@ public class GAlignFrame extends JInternalFrame
   protected JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem();
   JMenuItem epsFile = new JMenuItem();
   JMenuItem LoadtreeMenuItem = new JMenuItem();
+  JMenuItem jpred = new JMenuItem();
   public GAlignFrame()
   {
 
@@ -457,14 +458,14 @@ public class GAlignFrame extends JInternalFrame
         njTreeBlosumMenuItem_actionPerformed(e);
       }
     });
-    consensusGraphMenuItem.setActionCommand("");
-    consensusGraphMenuItem.setText("Consensus graph");
-    consensusGraphMenuItem.setState(true);
-    consensusGraphMenuItem.addActionListener(new java.awt.event.ActionListener()
+    annotationPanelMenuItem.setActionCommand("");
+    annotationPanelMenuItem.setText("Annotation Panel");
+    annotationPanelMenuItem.setState(true);
+    annotationPanelMenuItem.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        consensusGraphMenuItem_actionPerformed(e);
+        annotationPanelMenuItem_actionPerformed(e);
       }
     });
     colourTextMenuItem.setText("Colour text");
@@ -689,6 +690,14 @@ public class GAlignFrame extends JInternalFrame
         LoadtreeMenuItem_actionPerformed(e);
       }
     });
+    jpred.setText("JPred");
+    jpred.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        jpred_actionPerformed(e);
+      }
+    });
     alignFrameMenuBar.add(fileMenu);
     alignFrameMenuBar.add(editMenu);
     alignFrameMenuBar.add(searchMenu);
@@ -735,7 +744,7 @@ public class GAlignFrame extends JInternalFrame
     viewMenu.add(viewTextMenuItem);
     viewMenu.add(colourTextMenuItem);
     viewMenu.add(renderGapsMenuItem);
-    viewMenu.add(consensusGraphMenuItem);
+    viewMenu.add(annotationPanelMenuItem);
     viewMenu.add(overviewMenuItem);
     viewMenu.add(sequenceFeatures);
     colourMenu.add(applyToAllGroups);
@@ -769,6 +778,7 @@ public class GAlignFrame extends JInternalFrame
     calculateMenu.add(avDistanceTreeBlosumMenuItem);
     calculateMenu.add(njTreeBlosumMenuItem);
     alignMenu.add(clustalAlignMenuItem);
+    alignMenu.add(jpred);
     this.getContentPane().add(statusBar, BorderLayout.SOUTH);
     jMenu1.add(pasteNew);
     jMenu1.add(pasteThis);
@@ -889,7 +899,7 @@ public class GAlignFrame extends JInternalFrame
 
 
 
-  protected void consensusGraphMenuItem_actionPerformed(ActionEvent e)
+  protected void annotationPanelMenuItem_actionPerformed(ActionEvent e)
   {
 
   }
@@ -1125,4 +1135,9 @@ public class GAlignFrame extends JInternalFrame
 
   }
 
+  protected void jpred_actionPerformed(ActionEvent e)
+  {
+
+  }
+
 }