Feature Groups added

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index f421297..8c29d96 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -117,6 +117,8 @@ public class GAlignFrame
   //protected JTabbedPane tabbedPane = new JTabbedPane();\r
   public JMenuItem featureSettings = new JMenuItem();\r
   JMenuItem fetchSequence = new JMenuItem();\r
+  protected JCheckBoxMenuItem smoothFont = new JCheckBoxMenuItem();\r
+  JMenuItem annotationColour = new JMenuItem();\r
 \r
   public GAlignFrame()\r
   {\r
@@ -931,7 +933,7 @@ public class GAlignFrame
         featureSettings_actionPerformed(e);\r
       }\r
     });\r
-    fetchSequence.setText("Fetch Sequence...");\r
+    fetchSequence.setText("Fetch Sequence(s)...");\r
     fetchSequence.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
@@ -939,6 +941,23 @@ public class GAlignFrame
         fetchSequence_actionPerformed(e);\r
       }\r
     });\r
+    smoothFont.setText("Smooth Fonts");\r
+    smoothFont.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        smoothFont_actionPerformed(e);\r
+      }\r
+    });\r
+    smoothFont.setState( jalview.bin.Cache.getDefault("ANTI_ALIAS",false));\r
+    annotationColour.setText("By Annotation...");\r
+    annotationColour.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        annotationColour_actionPerformed(e);\r
+      }\r
+    });\r
     alignFrameMenuBar.add(fileMenu);\r
     alignFrameMenuBar.add(editMenu);\r
     alignFrameMenuBar.add(searchMenu);\r
@@ -977,6 +996,7 @@ public class GAlignFrame
     editMenu.add(padGapsMenuitem);\r
     searchMenu.add(findMenuItem);\r
     viewMenu.add(font);\r
+    viewMenu.add(smoothFont);\r
     viewMenu.addSeparator();\r
     viewMenu.add(wrapMenuItem);\r
     viewMenu.add(seqLimits);\r
@@ -995,6 +1015,7 @@ public class GAlignFrame
     viewMenu.add(overviewMenuItem);\r
     colourMenu.add(applyToAllGroups);\r
     colourMenu.addSeparator();\r
+    colourMenu.add(annotationColour);\r
     colourMenu.add(noColourmenuItem);\r
     colourMenu.add(clustalColour);\r
     colourMenu.add(BLOSUM62Colour);\r
@@ -1013,6 +1034,7 @@ public class GAlignFrame
     colourMenu.add(modifyConservation);\r
     colourMenu.add(abovePIDThreshold);\r
     colourMenu.add(modifyPID);\r
+    colourMenu.addSeparator();\r
     calculateMenu.add(sort);\r
     calculateMenu.add(calculate);\r
     calculateMenu.addSeparator();\r
@@ -1344,4 +1366,14 @@ public class GAlignFrame
   {\r
 \r
   }\r
+\r
+  public void smoothFont_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  public void annotationColour_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
 }\r