/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
package jalview.jbgui;
import jalview.schemes.ColourSchemeProperty;
+import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Color;
// JRadioButtonMenuItem();
protected JRadioButtonMenuItem tcoffeeColour = new JRadioButtonMenuItem();
-
-
+
JMenuItem njTreeBlosumMenuItem = new JMenuItem();
JMenuItem avDistanceTreeBlosumMenuItem = new JMenuItem();
public JCheckBoxMenuItem showSeqFeaturesHeight = new JCheckBoxMenuItem();
JMenuItem deleteGroups = new JMenuItem();
+
+ JMenuItem createGroup = new JMenuItem();
+ JMenuItem unGroup = new JMenuItem();
JMenuItem delete = new JMenuItem();
JMenuItem epsFile = new JMenuItem();
JMenuItem LoadtreeMenuItem = new JMenuItem();
-
+
public JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem();
public JCheckBoxMenuItem scaleLeft = new JCheckBoxMenuItem();
int option = JOptionPane.showInternalConfirmDialog(
jalview.gui.Desktop.desktop,
- "Remove from default list?",
- "Remove user defined colour",
+ MessageManager.getString("label.remove_from_default_list"),
+ MessageManager.getString("label.remove_user_defined_colour"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
nucleotideColour.setSelected(true);
break;
-
+
case ColourSchemeProperty.TCOFFEE:
- tcoffeeColour.setSelected(true);
- break;
+ tcoffeeColour.setSelected(true);
+ break;
case ColourSchemeProperty.PURINEPYRIMIDINE:
purinePyrimidineColour.setSelected(true);
invertSequenceMenuItem_actionPerformed(e);
}
});
- grpsFromSelection.setText("Make Groups for selection");
+ grpsFromSelection.setText("Make Groups For Selection");
grpsFromSelection.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
});
this.getContentPane().setLayout(borderLayout1);
alignFrameMenuBar.setFont(new java.awt.Font("Verdana", 0, 11));
- alignFrameMenuBar.setBackground(Color.lightGray);
statusBar.setBackground(Color.white);
statusBar.setFont(new java.awt.Font("Verdana", 0, 11));
statusBar.setBorder(BorderFactory.createLineBorder(Color.black));
nucleotideColour_actionPerformed(e);
}
});
-
+
tcoffeeColour.setText("T-Coffee scores");
tcoffeeColour.setEnabled(false);
- tcoffeeColour.addActionListener( new ActionListener() {
-
- @Override
- public void actionPerformed(ActionEvent e) {
- tcoffeeColorScheme_actionPerformed(e);
- }
- } );
-
-
+ tcoffeeColour.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ tcoffeeColorScheme_actionPerformed(e);
+ }
+ });
+
deleteGroups.setText("Undefine groups");
deleteGroups.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_U, Toolkit.getDefaultToolkit()
deleteGroups_actionPerformed(e);
}
});
+ createGroup.setText("Create group");
+ createGroup.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
+ java.awt.event.KeyEvent.VK_G, Toolkit.getDefaultToolkit()
+ .getMenuShortcutKeyMask(), false));
+ createGroup.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ createGroup_actionPerformed(e);
+ }
+ });
+ unGroup.setText("Remove Group");
+ unGroup.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
+ java.awt.event.KeyEvent.VK_G,Toolkit.getDefaultToolkit()
+ .getMenuShortcutKeyMask() | java.awt.event.KeyEvent.SHIFT_MASK, false));
+ unGroup.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ unGroup_actionPerformed(e);
+ }
+ });
copy.setText("Copy");
copy.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
java.awt.event.KeyEvent.VK_C, Toolkit.getDefaultToolkit()
}
});
LoadtreeMenuItem.setActionCommand("Load a tree for this sequence set");
- LoadtreeMenuItem.setText("Load Associated Tree");
+ LoadtreeMenuItem.setText("Load Associated Tree");
LoadtreeMenuItem.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
LoadtreeMenuItem_actionPerformed(e);
}
});
-
+
scaleAbove.setVisible(false);
scaleAbove.setText("Scale Above");
scaleAbove.addActionListener(new java.awt.event.ActionListener()
}
});
sortByTree.setText("Sort Alignment With New Tree");
- sortByTree.setToolTipText("<html>Enable this to automatically sort<br>the alignment when you open<br> a new tree.");
- sortByTree.setState(jalview.bin.Cache.getDefault(
- "SORT_BY_TREE", false));
+ sortByTree
+ .setToolTipText("<html>Enable this to automatically sort<br>the alignment when you open<br> a new tree.");
+ sortByTree
+ .setState(jalview.bin.Cache.getDefault("SORT_BY_TREE", false));
sortByTree.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
});
listenToViewSelections.setText("Listen for selections");
- listenToViewSelections.setToolTipText("<html>When selected, selections in this view will mirror<br>selections made on the same sequences in other views.");
- listenToViewSelections.setState(false);
+ listenToViewSelections
+ .setToolTipText("<html>When selected, selections in this view will mirror<br>selections made on the same sequences in other views.");
+ listenToViewSelections.setState(false);
listenToViewSelections.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
selectMenu.add(deselectAllSequenceMenuItem);
selectMenu.add(invertSequenceMenuItem);
selectMenu.add(invertColSel);
- selectMenu.add(deleteGroups);
+ selectMenu.add(createGroup);
+ selectMenu.add(unGroup);
selectMenu.add(grpsFromSelection);
- // TODO - determine if the listenToViewSelections button is needed : see bug JAL-574
- //selectMenu.addSeparator();
- //selectMenu.add(listenToViewSelections);
+ selectMenu.add(deleteGroups);
+ // TODO - determine if the listenToViewSelections button is needed : see bug
+ // JAL-574
+ // selectMenu.addSeparator();
+ // selectMenu.add(listenToViewSelections);
}
protected void normaliseSequenceLogo_actionPerformed(ActionEvent e)
{
// TODO Auto-generated method stub
-
+
}
protected void listenToViewSelections_actionPerformed(ActionEvent e)
{
// TODO Auto-generated method stub
-
+
}
protected void showAllhidden_actionPerformed(ActionEvent e)
protected void deleteGroups_actionPerformed(ActionEvent e)
{
}
+
+ protected void createGroup_actionPerformed(ActionEvent e)
+ {
+ }
+
+ protected void unGroup_actionPerformed(ActionEvent e)
+ {
+ }
protected void copy_actionPerformed(ActionEvent e)
{
{
}
-
+
/**
- * Template method to handle the 'load T-Coffee scores' menu event.
+ * Template method to handle the 'load T-Coffee scores' menu event.
* <p>
* Subclasses override this method to provide a custom action.
- *
- * @param event The raised event
+ *
+ * @param event
+ * The raised event
*/
- protected void loadScores_actionPerformed(ActionEvent event) {
-
+ protected void loadScores_actionPerformed(ActionEvent event)
+ {
+
}
-
/**
- * Template method to handle the 'Color T-Coffee scores' menu event.
+ * Template method to handle the 'Color T-Coffee scores' menu event.
* <p>
* Subclasses override this method to provide a custom action.
- *
- * @param event The raised event
+ *
+ * @param event
+ * The raised event
*/
- protected void tcoffeeColorScheme_actionPerformed(ActionEvent event) {
-
+ protected void tcoffeeColorScheme_actionPerformed(ActionEvent event)
+ {
+
}
-
protected void jpred_actionPerformed(ActionEvent e)
{
git://source.jalview.org / jalview.git / blobdiff