JAL-961 store result of conservation analysis worker on the alignment viewport

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 13ec23f..cf78585 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -242,6 +242,8 @@ public class GAlignFrame extends JInternalFrame
   protected JMenuItem showTranslation = new JMenuItem();
 
   protected JMenuItem extractScores = new JMenuItem();
+  
+  protected JMenuItem expandAlignment = new JMenuItem();
 
   protected JMenu showProducts = new JMenu();
 
@@ -630,7 +632,15 @@ public class GAlignFrame extends JInternalFrame
         makeGrpsFromSelection_actionPerformed(e);
       }
     });
-
+    expandAlignment.setText(MessageManager.getString("action.view_flanking_regions"));
+    expandAlignment.setToolTipText(MessageManager.getString("label.view_flanking_regions"));
+    expandAlignment.addActionListener(new java.awt.event.ActionListener() {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        expand_newalign(e);
+      }
+    });
     remove2LeftMenuItem.setText(MessageManager.getString("action.remove_left"));
     remove2LeftMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(
             java.awt.event.KeyEvent.VK_L, Toolkit.getDefaultToolkit()
@@ -865,7 +875,7 @@ public class GAlignFrame extends JInternalFrame
         strandColour_actionPerformed(e);
       }
     });
-    turnColour.setText(MessageManager.getString("Turn Propensity"));
+    turnColour.setText(MessageManager.getString("label.turn_propensity"));
     turnColour.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -873,7 +883,7 @@ public class GAlignFrame extends JInternalFrame
         turnColour_actionPerformed(e);
       }
     });
-    buriedColour.setText(MessageManager.getString("Buried Index"));
+    buriedColour.setText(MessageManager.getString("label.buried_index"));
     buriedColour.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -1972,6 +1982,7 @@ public class GAlignFrame extends JInternalFrame
     selectMenu.add(unGroup);
     selectMenu.add(grpsFromSelection);
     selectMenu.add(deleteGroups);
+    calculateMenu.add(expandAlignment);
     // TODO - determine if the listenToViewSelections button is needed : see bug
     // JAL-574
     // selectMenu.addSeparator();
@@ -2612,4 +2623,10 @@ public class GAlignFrame extends JInternalFrame
   {
 
   }
+
+  protected void expand_newalign(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+    
+  }
 }