Autocalculate consensus

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index bddc504..f0e5e67 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -110,7 +110,7 @@ public class GAlignFrame
   protected JMenu sort = new JMenu();\r
   JMenu calculate = new JMenu();\r
   JMenu jMenu2 = new JMenu();\r
-  JMenuItem padGapsMenuitem = new JMenuItem();\r
+  protected JCheckBoxMenuItem padGapsMenuitem = new JCheckBoxMenuItem();\r
   protected ButtonGroup colours = new ButtonGroup();\r
   JMenuItem vamsasStore = new JMenuItem();\r
   protected JCheckBoxMenuItem showTranslation = new JCheckBoxMenuItem();\r
@@ -124,6 +124,7 @@ public class GAlignFrame
 \r
 \r
   JMenuItem associatedData = new JMenuItem();\r
+  protected JCheckBoxMenuItem autoCalculate = new JCheckBoxMenuItem();\r
   public GAlignFrame()\r
   {\r
 \r
@@ -977,6 +978,15 @@ public class GAlignFrame
         associatedData_actionPerformed(e);\r
       }\r
     });\r
+    autoCalculate.setText("Autocalculate Consensus");\r
+    autoCalculate.setState(true);\r
+    autoCalculate.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        autoCalculate_actionPerformed(e);\r
+      }\r
+    });\r
     alignFrameMenuBar.add(fileMenu);\r
     alignFrameMenuBar.add(editMenu);\r
     alignFrameMenuBar.add(searchMenu);\r
@@ -1063,6 +1073,7 @@ public class GAlignFrame
     calculateMenu.add(PCAMenuItem);\r
     calculateMenu.addSeparator();\r
     calculateMenu.add(showTranslation);\r
+    calculateMenu.add(autoCalculate);\r
     webServiceNoServices=new JMenuItem("<No Services>");\r
     webService.add(webServiceNoServices);\r
     this.getContentPane().add(statusBar, BorderLayout.SOUTH);\r
@@ -1373,11 +1384,6 @@ public class GAlignFrame
 \r
   }\r
 \r
-  public void tabSelected()\r
-  {\r
-\r
-  }\r
-\r
   public void featureSettings_actionPerformed(ActionEvent e)\r
   {\r
 \r
@@ -1407,4 +1413,9 @@ public class GAlignFrame
   {\r
 \r
   }\r
+\r
+  public void autoCalculate_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
 }\r