Hide vamsas settings for build

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 6ec19e2..f7b1342 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -115,9 +115,10 @@ public class GAlignFrame
   protected ButtonGroup colours = new ButtonGroup();\r
   JMenuItem vamsasStore = new JMenuItem();\r
   protected JCheckBoxMenuItem showTranslation = new JCheckBoxMenuItem();\r
-  protected JTabbedPane tabbedPane = new JTabbedPane();\r
-  protected JMenuItem featureSettings = new JMenuItem();\r
+  //protected JTabbedPane tabbedPane = new JTabbedPane();\r
+  public JMenuItem featureSettings = new JMenuItem();\r
   public JCheckBoxMenuItem seqDBRef = new JCheckBoxMenuItem();\r
+  JMenuItem fetchSequence = new JMenuItem();\r
 \r
   public GAlignFrame()\r
   {\r
@@ -476,21 +477,6 @@ public class GAlignFrame
     });\r
     this.getContentPane().setLayout(borderLayout1);\r
     alignFrameMenuBar.setFont(new java.awt.Font("Verdana", 0, 11));\r
-    alignFrameMenuBar.addAncestorListener(new AncestorListener()\r
-    {\r
-      public void ancestorAdded(AncestorEvent event)\r
-      {\r
-        alignFrameMenuBar_ancestorAdded(event);\r
-      }\r
-\r
-      public void ancestorRemoved(AncestorEvent event)\r
-      {\r
-      }\r
-\r
-      public void ancestorMoved(AncestorEvent event)\r
-      {\r
-      }\r
-    });\r
     statusBar.setBackground(Color.white);\r
     statusBar.setFont(new java.awt.Font("Verdana", 0, 11));\r
     statusBar.setBorder(BorderFactory.createLineBorder(Color.black));\r
@@ -912,6 +898,7 @@ public class GAlignFrame
         padGapsMenuitem_actionPerformed(e);\r
       }\r
     });\r
+    vamsasStore.setVisible(false);\r
     vamsasStore.setText("VAMSAS store");\r
     vamsasStore.addActionListener(new ActionListener()\r
     {\r
@@ -929,14 +916,14 @@ public class GAlignFrame
       }\r
     });\r
 \r
-    tabbedPane.addChangeListener(new ChangeListener()\r
+   /* tabbedPane.addChangeListener(new ChangeListener()\r
         {\r
           public void stateChanged(ChangeEvent ece)\r
           {\r
 \r
             tabSelected();\r
           }\r
-        });\r
+        });*/\r
     featureSettings.setEnabled(false);\r
     featureSettings.setText("Feature Settings...");\r
     featureSettings.addActionListener(new ActionListener()\r
@@ -947,7 +934,7 @@ public class GAlignFrame
       }\r
     });\r
     seqDBRef.setState( jalview.bin.Cache.getDefault("SHOW_DBPREFIX",true));\r
-    seqDBRef.setText("Show Sequence DB Refs");\r
+    seqDBRef.setText("Show Full Sequence Id");\r
     seqDBRef.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
@@ -955,6 +942,14 @@ public class GAlignFrame
         seqDBRef_actionPerformed(e);\r
       }\r
     });\r
+    fetchSequence.setText("Fetch Sequence...");\r
+    fetchSequence.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        fetchSequence_actionPerformed(e);\r
+      }\r
+    });\r
     alignFrameMenuBar.add(fileMenu);\r
     alignFrameMenuBar.add(editMenu);\r
     alignFrameMenuBar.add(searchMenu);\r
@@ -962,6 +957,7 @@ public class GAlignFrame
     alignFrameMenuBar.add(colourMenu);\r
     alignFrameMenuBar.add(calculateMenu);\r
     alignFrameMenuBar.add(webService);\r
+    fileMenu.add(fetchSequence);\r
     fileMenu.add(vamsasStore);\r
     fileMenu.add(saveAlignmentMenu);\r
     fileMenu.add(jMenu2);\r
@@ -1039,7 +1035,7 @@ public class GAlignFrame
     webServiceNoServices=new JMenuItem("<No Services>");\r
     webService.add(webServiceNoServices);\r
     this.getContentPane().add(statusBar, BorderLayout.SOUTH);\r
-    this.getContentPane().add(tabbedPane, java.awt.BorderLayout.CENTER);\r
+  //  this.getContentPane().add(tabbedPane, java.awt.BorderLayout.CENTER);\r
     jMenu1.add(pasteNew);\r
     jMenu1.add(pasteThis);\r
     sort.add(sortIDMenuItem);\r
@@ -1166,10 +1162,6 @@ public class GAlignFrame
   {\r
   }\r
 \r
-  protected void clustalAlignMenuItem_actionPerformed(ActionEvent e)\r
-  {\r
-  }\r
-\r
   protected void clustalColour_actionPerformed(ActionEvent e)\r
   {\r
   }\r
@@ -1324,17 +1316,7 @@ public class GAlignFrame
   {\r
   }\r
 \r
-  protected void preferences_actionPerformed(ActionEvent e)\r
-  {\r
-  }\r
 \r
-  protected void msaAlignMenuItem_actionPerformed(ActionEvent e)\r
-  {\r
-  }\r
-\r
-  protected void alignFrameMenuBar_ancestorAdded(AncestorEvent event)\r
-  {\r
-  }\r
 \r
   protected void saveAlignmentMenu_actionPerformed(ActionEvent e)\r
   {\r
@@ -1344,9 +1326,6 @@ public class GAlignFrame
   {\r
   }\r
 \r
-  protected void ClustalRealign_actionPerformed(ActionEvent e)\r
-  {\r
-  }\r
 \r
   public void vamsasStore_actionPerformed(ActionEvent e)\r
   {\r
@@ -1373,4 +1352,8 @@ public class GAlignFrame
 \r
   }\r
 \r
+  public void fetchSequence_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
 }\r