-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.jbgui;\r
\r
import java.awt.*;\r
-\r
import javax.swing.*;\r
import javax.swing.border.*;\r
\r
+public class GAlignmentPanel\r
+ extends JPanel\r
+{\r
+ protected JPanel sequenceHolderPanel = new JPanel();\r
+ protected JScrollBar vscroll = new JScrollBar();\r
+ protected JScrollBar hscroll = new JScrollBar();\r
+ protected JPanel seqPanelHolder = new JPanel();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ BorderLayout borderLayout3 = new BorderLayout();\r
+ protected JPanel scalePanelHolder = new JPanel();\r
+ protected JPanel idPanelHolder = new JPanel();\r
+ BorderLayout borderLayout5 = new BorderLayout();\r
+ protected JPanel idSpaceFillerPanel1 = new JPanel();\r
+ public JPanel annotationSpaceFillerHolder = new JPanel();\r
+ BorderLayout borderLayout6 = new BorderLayout();\r
+ ButtonGroup buttonGroup1 = new ButtonGroup();\r
+ BorderLayout borderLayout7 = new BorderLayout();\r
+ JPanel hscrollHolder = new JPanel();\r
+ BorderLayout borderLayout10 = new BorderLayout();\r
+ protected JPanel hscrollFillerPanel = new JPanel();\r
+ BorderLayout borderLayout11 = new BorderLayout();\r
+ public JScrollPane annotationScroller = new JScrollPane();\r
+ Border border1;\r
+ BorderLayout borderLayout4 = new BorderLayout();\r
\r
-public class GAlignmentPanel extends JPanel {\r
- protected JPanel sequenceHolderPanel = new JPanel();\r
- protected JScrollBar vscroll = new JScrollBar();\r
- protected JScrollBar hscroll = new JScrollBar();\r
- protected JPanel seqPanelHolder = new JPanel();\r
- BorderLayout borderLayout1 = new BorderLayout();\r
- BorderLayout borderLayout3 = new BorderLayout();\r
- protected JPanel scalePanelHolder = new JPanel();\r
- protected JPanel idPanelHolder = new JPanel();\r
- BorderLayout borderLayout5 = new BorderLayout();\r
- protected JPanel idSpaceFillerPanel1 = new JPanel();\r
- public JPanel annotationSpaceFillerHolder = new JPanel();\r
- BorderLayout borderLayout6 = new BorderLayout();\r
- ButtonGroup buttonGroup1 = new ButtonGroup();\r
- BorderLayout borderLayout7 = new BorderLayout();\r
- JPanel hscrollHolder = new JPanel();\r
- BorderLayout borderLayout10 = new BorderLayout();\r
- protected JPanel hscrollFillerPanel = new JPanel();\r
- BorderLayout borderLayout11 = new BorderLayout();\r
- public JScrollPane annotationScroller = new JScrollPane();\r
- Border border1;\r
- BorderLayout borderLayout4 = new BorderLayout();\r
-\r
- public GAlignmentPanel() {\r
- try {\r
- jbInit();\r
- } catch (Exception e) {\r
- e.printStackTrace();\r
- }\r
+ public GAlignmentPanel()\r
+ {\r
+ try\r
+ {\r
+ jbInit();\r
+ }\r
+ catch (Exception e)\r
+ {\r
+ e.printStackTrace();\r
}\r
+ }\r
\r
- private void jbInit() throws Exception {\r
- border1 = BorderFactory.createLineBorder(Color.gray, 1);\r
- idPanelHolder.setBorder(null);\r
- idPanelHolder.setPreferredSize(new Dimension(70, 10));\r
- this.setLayout(borderLayout7);\r
- sequenceHolderPanel.setMaximumSize(new Dimension(2147483647, 2147483647));\r
- sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));\r
- sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));\r
- sequenceHolderPanel.setLayout(borderLayout3);\r
- seqPanelHolder.setLayout(borderLayout1);\r
- scalePanelHolder.setBackground(Color.white);\r
- scalePanelHolder.setMinimumSize(new Dimension(10, 80));\r
- scalePanelHolder.setPreferredSize(new Dimension(10, 30));\r
- scalePanelHolder.setLayout(borderLayout6);\r
- idPanelHolder.setLayout(borderLayout5);\r
- idSpaceFillerPanel1.setBackground(Color.white);\r
- idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));\r
- idSpaceFillerPanel1.setLayout(borderLayout11);\r
- annotationSpaceFillerHolder.setBackground(Color.white);\r
- annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));\r
- annotationSpaceFillerHolder.setLayout(borderLayout4);\r
- hscroll.setOrientation(JScrollBar.HORIZONTAL);\r
- hscrollHolder.setLayout(borderLayout10);\r
- hscrollFillerPanel.setBackground(Color.white);\r
- hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));\r
- hscrollHolder.setBackground(Color.white);\r
- annotationScroller.setBorder(null);\r
- annotationScroller.setPreferredSize(new Dimension(10, 80));\r
- this.setPreferredSize(new Dimension(220, 166));\r
- this.setRequestFocusEnabled(true);\r
- sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);\r
- sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);\r
- seqPanelHolder.add(vscroll, BorderLayout.EAST);\r
- sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);\r
+ private void jbInit()\r
+ throws Exception\r
+ {\r
+ border1 = BorderFactory.createLineBorder(Color.gray, 1);\r
+ idPanelHolder.setBorder(null);\r
+ idPanelHolder.setPreferredSize(new Dimension(70, 10));\r
+ this.setLayout(borderLayout7);\r
+ sequenceHolderPanel.setMaximumSize(new Dimension(2147483647, 2147483647));\r
+ sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));\r
+ sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));\r
+ sequenceHolderPanel.setLayout(borderLayout3);\r
+ seqPanelHolder.setLayout(borderLayout1);\r
+ scalePanelHolder.setBackground(Color.white);\r
+ scalePanelHolder.setMinimumSize(new Dimension(10, 80));\r
+ scalePanelHolder.setPreferredSize(new Dimension(10, 30));\r
+ scalePanelHolder.setLayout(borderLayout6);\r
+ idPanelHolder.setLayout(borderLayout5);\r
+ idSpaceFillerPanel1.setBackground(Color.white);\r
+ idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));\r
+ idSpaceFillerPanel1.setLayout(borderLayout11);\r
+ annotationSpaceFillerHolder.setBackground(Color.white);\r
+ annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));\r
+ annotationSpaceFillerHolder.setLayout(borderLayout4);\r
+ hscroll.setOrientation(JScrollBar.HORIZONTAL);\r
+ hscrollHolder.setLayout(borderLayout10);\r
+ hscrollFillerPanel.setBackground(Color.white);\r
+ hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));\r
+ hscrollHolder.setBackground(Color.white);\r
+ annotationScroller.setBorder(null);\r
+ annotationScroller.setPreferredSize(new Dimension(10, 80));\r
+ this.setPreferredSize(new Dimension(220, 166));\r
+ this.setRequestFocusEnabled(true);\r
\r
- // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);\r
- this.add(idPanelHolder, BorderLayout.WEST);\r
- idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);\r
- idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);\r
- this.add(hscrollHolder, BorderLayout.SOUTH);\r
- hscrollHolder.add(hscroll, BorderLayout.CENTER);\r
- hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);\r
- this.add(sequenceHolderPanel, BorderLayout.CENTER);\r
- }\r
+ sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);\r
+ sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);\r
+ seqPanelHolder.add(vscroll, BorderLayout.EAST);\r
+ sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);\r
+\r
+ // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);\r
+ this.add(idPanelHolder, BorderLayout.WEST);\r
+ idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);\r
+ idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);\r
+ this.add(hscrollHolder, BorderLayout.SOUTH);\r
+ hscrollHolder.add(hscroll, BorderLayout.CENTER);\r
+ hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);\r
+ this.add(sequenceHolderPanel, BorderLayout.CENTER);\r
+ }\r
}\r