import java.awt.*;
import javax.swing.*;
+import javax.swing.border.*;
public class GAlignmentPanel extends JPanel
{
protected JPanel seqPanelHolder = new JPanel();
BorderLayout borderLayout1 = new BorderLayout();
BorderLayout borderLayout3 = new BorderLayout();
- JPanel jPanel2 = new JPanel();
- BorderLayout borderLayout2 = new BorderLayout();
- protected JPanel scorePanelHolder = new JPanel();
protected JPanel scalePanelHolder = new JPanel();
protected JPanel idPanelHolder = new JPanel();
BorderLayout borderLayout5 = new BorderLayout();
protected JPanel idSpaceFillerPanel1 = new JPanel();
- protected JPanel idSpaceFillerPanel = new JPanel();
- BorderLayout borderLayout4 = new BorderLayout();
+ public JPanel annotationSpaceFillerHolder = new JPanel();
BorderLayout borderLayout6 = new BorderLayout();
ButtonGroup buttonGroup1 = new ButtonGroup();
BorderLayout borderLayout7 = new BorderLayout();
- JPanel jPanel1 = new JPanel();
- FlowLayout flowLayout1 = new FlowLayout();
+ JPanel hscrollHolder = new JPanel();
+ BorderLayout borderLayout10 = new BorderLayout();
+ protected JPanel hscrollFillerPanel = new JPanel();
+ BorderLayout borderLayout11 = new BorderLayout();
+ public JScrollPane annotationScroller = new JScrollPane();
+ Border border1;
+ BorderLayout borderLayout4 = new BorderLayout();
public GAlignmentPanel()
{
}
private void jbInit() throws Exception
{
+ border1 = BorderFactory.createLineBorder(Color.gray,1);
idPanelHolder.setBorder(null);
idPanelHolder.setPreferredSize(new Dimension(70, 10));
this.setLayout(borderLayout7);
sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
sequenceHolderPanel.setLayout(borderLayout3);
seqPanelHolder.setLayout(borderLayout1);
- jPanel2.setBackground(new Color(212, 208, 230));
- jPanel2.setBorder(null);
- jPanel2.setLayout(borderLayout2);
scalePanelHolder.setBackground(Color.white);
scalePanelHolder.setMinimumSize(new Dimension(10, 80));
scalePanelHolder.setPreferredSize(new Dimension(10, 30));
scalePanelHolder.setLayout(borderLayout6);
- scorePanelHolder.setBackground(Color.white);
- scorePanelHolder.setPreferredSize(new Dimension(10, 80));
- scorePanelHolder.setLayout(borderLayout4);
idPanelHolder.setLayout(borderLayout5);
idSpaceFillerPanel1.setBackground(Color.white);
idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
- idSpaceFillerPanel.setBackground(Color.white);
- idSpaceFillerPanel.setPreferredSize(new Dimension(10, 80));
+ idSpaceFillerPanel1.setLayout(borderLayout11);
+ annotationSpaceFillerHolder.setBackground(Color.white);
+ annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));
+ annotationSpaceFillerHolder.setLayout(borderLayout4);
hscroll.setOrientation(JScrollBar.HORIZONTAL);
- hscroll.setMinimumSize(new Dimension(250, 16));
- hscroll.setPreferredSize(new Dimension(250, 16));
- vscroll.setEnabled(true);
- jPanel1.setBackground(new Color(220, 220, 220));
- jPanel1.setLayout(flowLayout1);
- flowLayout1.setHgap(0);
- flowLayout1.setVgap(0);
- sequenceHolderPanel.add(scorePanelHolder, BorderLayout.SOUTH);
+ hscrollHolder.setLayout(borderLayout10);
+ hscrollFillerPanel.setBackground(Color.white);
+ hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));
+ hscrollHolder.setBackground(Color.white);
+ annotationScroller.setBorder(null);
+ annotationScroller.setPreferredSize(new Dimension(10, 80));
+ this.setPreferredSize(new Dimension(220, 166));
+ this.setRequestFocusEnabled(true);
sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);
sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);
- this.add(jPanel2, BorderLayout.CENTER);
- jPanel2.add(sequenceHolderPanel, BorderLayout.CENTER);
seqPanelHolder.add(vscroll, BorderLayout.EAST);
+ sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);
+ // jPanel3.add(secondaryPanelHolder, BorderLayout.SOUTH);
this.add(idPanelHolder, BorderLayout.WEST);
idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);
- idPanelHolder.add(idSpaceFillerPanel, BorderLayout.SOUTH);
- this.add(jPanel1, BorderLayout.SOUTH);
- jPanel1.add(hscroll, null);
+ idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);
+ this.add(hscrollHolder, BorderLayout.SOUTH);
+ hscrollHolder.add(hscroll, BorderLayout.CENTER);
+ hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);
+ this.add(sequenceHolderPanel, BorderLayout.CENTER);
}