Formatted source
[jalview.git] / src / jalview / jbgui / GAlignmentPanel.java
index 7d8ace7..fc8b8dd 100755 (executable)
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
-package jalview.jbgui;
-
-import java.awt.*;
-import javax.swing.*;
-
-public class GAlignmentPanel extends JPanel
-{
-  protected JPanel sequenceHolderPanel = new JPanel();
-  protected JScrollBar vscroll = new JScrollBar();
-  protected  JScrollBar hscroll = new JScrollBar();
-  protected JPanel seqPanelHolder = new JPanel();
-  BorderLayout borderLayout1 = new BorderLayout();
-  BorderLayout borderLayout3 = new BorderLayout();
-  JPanel jPanel2 = new JPanel();
-  BorderLayout borderLayout2 = new BorderLayout();
-  protected JPanel scorePanelHolder = new JPanel();
-  protected JPanel scalePanelHolder = new JPanel();
-  protected JPanel idPanelHolder = new JPanel();
-  BorderLayout borderLayout5 = new BorderLayout();
-  protected JPanel idSpaceFillerPanel1 = new JPanel();
-  protected JPanel idSpaceFillerPanel = new JPanel();
-  BorderLayout borderLayout4 = new BorderLayout();
-  BorderLayout borderLayout6 = new BorderLayout();
-  ButtonGroup buttonGroup1 = new ButtonGroup();
-  BorderLayout borderLayout7 = new BorderLayout();
-
-  public GAlignmentPanel()
-  {
-    try
-    {
-      jbInit();
-    }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-  }
-  private void jbInit() throws Exception
-  {
-    idPanelHolder.setBorder(null);
-    idPanelHolder.setPreferredSize(new Dimension(70, 10));
-    this.setLayout(borderLayout7);
-    sequenceHolderPanel.setMaximumSize(new Dimension(2147483647, 2147483647));
-    sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));
-    sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));
-    sequenceHolderPanel.setLayout(borderLayout3);
-    seqPanelHolder.setLayout(borderLayout1);
-    jPanel2.setBackground(new Color(212, 208, 230));
-    jPanel2.setBorder(null);
-    jPanel2.setLayout(borderLayout2);
-    scalePanelHolder.setBackground(Color.white);
-    scalePanelHolder.setMinimumSize(new Dimension(10, 80));
-    scalePanelHolder.setPreferredSize(new Dimension(10, 30));
-    scalePanelHolder.setLayout(borderLayout6);
-    scorePanelHolder.setBackground(Color.white);
-    scorePanelHolder.setPreferredSize(new Dimension(10, 80));
-    scorePanelHolder.setLayout(borderLayout4);
-    idPanelHolder.setLayout(borderLayout5);
-    idSpaceFillerPanel1.setBackground(Color.white);
-    idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));
-    idSpaceFillerPanel.setBackground(Color.white);
-    idSpaceFillerPanel.setPreferredSize(new Dimension(10, 80));
-    hscroll.setOrientation(JScrollBar.HORIZONTAL);
-    vscroll.setEnabled(true);
-    sequenceHolderPanel.add(scorePanelHolder, BorderLayout.SOUTH);
-    sequenceHolderPanel.add(scalePanelHolder,  BorderLayout.NORTH);
-    sequenceHolderPanel.add(seqPanelHolder,  BorderLayout.CENTER);
-    this.add(jPanel2, BorderLayout.CENTER);
-    jPanel2.add(sequenceHolderPanel, BorderLayout.CENTER);
-    seqPanelHolder.add(vscroll, BorderLayout.EAST);
-    this.add(idPanelHolder, BorderLayout.WEST);
-    idPanelHolder.add(idSpaceFillerPanel1,  BorderLayout.NORTH);
-    idPanelHolder.add(idSpaceFillerPanel,  BorderLayout.SOUTH);
-    this.add(hscroll,  BorderLayout.SOUTH);
-  }
-
-
-}
+/*
+* Jalview - A Sequence Alignment Editor and Viewer
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+*
+* This program is free software; you can redistribute it and/or
+* modify it under the terms of the GNU General Public License
+* as published by the Free Software Foundation; either version 2
+* of the License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with this program; if not, write to the Free Software
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+*/\r
+package jalview.jbgui;\r
+\r
+import java.awt.*;\r
+\r
+import javax.swing.*;\r
+import javax.swing.border.*;\r
+\r
+\r
+public class GAlignmentPanel extends JPanel {\r
+    protected JPanel sequenceHolderPanel = new JPanel();\r
+    protected JScrollBar vscroll = new JScrollBar();\r
+    protected JScrollBar hscroll = new JScrollBar();\r
+    protected JPanel seqPanelHolder = new JPanel();\r
+    BorderLayout borderLayout1 = new BorderLayout();\r
+    BorderLayout borderLayout3 = new BorderLayout();\r
+    protected JPanel scalePanelHolder = new JPanel();\r
+    protected JPanel idPanelHolder = new JPanel();\r
+    BorderLayout borderLayout5 = new BorderLayout();\r
+    protected JPanel idSpaceFillerPanel1 = new JPanel();\r
+    public JPanel annotationSpaceFillerHolder = new JPanel();\r
+    BorderLayout borderLayout6 = new BorderLayout();\r
+    ButtonGroup buttonGroup1 = new ButtonGroup();\r
+    BorderLayout borderLayout7 = new BorderLayout();\r
+    JPanel hscrollHolder = new JPanel();\r
+    BorderLayout borderLayout10 = new BorderLayout();\r
+    protected JPanel hscrollFillerPanel = new JPanel();\r
+    BorderLayout borderLayout11 = new BorderLayout();\r
+    public JScrollPane annotationScroller = new JScrollPane();\r
+    Border border1;\r
+    BorderLayout borderLayout4 = new BorderLayout();\r
+\r
+    public GAlignmentPanel() {\r
+        try {\r
+            jbInit();\r
+        } catch (Exception e) {\r
+            e.printStackTrace();\r
+        }\r
+    }\r
+\r
+    private void jbInit() throws Exception {\r
+        border1 = BorderFactory.createLineBorder(Color.gray, 1);\r
+        idPanelHolder.setBorder(null);\r
+        idPanelHolder.setPreferredSize(new Dimension(70, 10));\r
+        this.setLayout(borderLayout7);\r
+        sequenceHolderPanel.setMaximumSize(new Dimension(2147483647, 2147483647));\r
+        sequenceHolderPanel.setMinimumSize(new Dimension(150, 150));\r
+        sequenceHolderPanel.setPreferredSize(new Dimension(150, 150));\r
+        sequenceHolderPanel.setLayout(borderLayout3);\r
+        seqPanelHolder.setLayout(borderLayout1);\r
+        scalePanelHolder.setBackground(Color.white);\r
+        scalePanelHolder.setMinimumSize(new Dimension(10, 80));\r
+        scalePanelHolder.setPreferredSize(new Dimension(10, 30));\r
+        scalePanelHolder.setLayout(borderLayout6);\r
+        idPanelHolder.setLayout(borderLayout5);\r
+        idSpaceFillerPanel1.setBackground(Color.white);\r
+        idSpaceFillerPanel1.setPreferredSize(new Dimension(10, 30));\r
+        idSpaceFillerPanel1.setLayout(borderLayout11);\r
+        annotationSpaceFillerHolder.setBackground(Color.white);\r
+        annotationSpaceFillerHolder.setPreferredSize(new Dimension(10, 80));\r
+        annotationSpaceFillerHolder.setLayout(borderLayout4);\r
+        hscroll.setOrientation(JScrollBar.HORIZONTAL);\r
+        hscrollHolder.setLayout(borderLayout10);\r
+        hscrollFillerPanel.setBackground(Color.white);\r
+        hscrollFillerPanel.setPreferredSize(new Dimension(70, 10));\r
+        hscrollHolder.setBackground(Color.white);\r
+        annotationScroller.setBorder(null);\r
+        annotationScroller.setPreferredSize(new Dimension(10, 80));\r
+        this.setPreferredSize(new Dimension(220, 166));\r
+        this.setRequestFocusEnabled(true);\r
+        sequenceHolderPanel.add(scalePanelHolder, BorderLayout.NORTH);\r
+        sequenceHolderPanel.add(seqPanelHolder, BorderLayout.CENTER);\r
+        seqPanelHolder.add(vscroll, BorderLayout.EAST);\r
+        sequenceHolderPanel.add(annotationScroller, BorderLayout.SOUTH);\r
+\r
+        //  jPanel3.add(secondaryPanelHolder,  BorderLayout.SOUTH);\r
+        this.add(idPanelHolder, BorderLayout.WEST);\r
+        idPanelHolder.add(idSpaceFillerPanel1, BorderLayout.NORTH);\r
+        idPanelHolder.add(annotationSpaceFillerHolder, BorderLayout.SOUTH);\r
+        this.add(hscrollHolder, BorderLayout.SOUTH);\r
+        hscrollHolder.add(hscroll, BorderLayout.CENTER);\r
+        hscrollHolder.add(hscrollFillerPanel, BorderLayout.WEST);\r
+        this.add(sequenceHolderPanel, BorderLayout.CENTER);\r
+    }\r
+}\r