Align boxes
[jalview.git] / src / jalview / jbgui / GDesktop.java
index 1dc49b7..1b54f83 100755 (executable)
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.jbgui;\r
 \r
-import javax.swing.*;\r
-import java.awt.event.*;\r
 import java.awt.*;\r
+import java.awt.event.*;\r
+\r
+import javax.swing.*;\r
 \r
 \r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
 public class GDesktop extends JFrame\r
 {\r
-  JMenuBar DesktopMenubar = new JMenuBar();\r
-  JMenu FileMenu = new JMenu();\r
-  JMenu HelpMenu = new JMenu();\r
-  JMenuItem inputLocalFileMenuItem = new JMenuItem();\r
-  JMenuItem inputURLMenuItem = new JMenuItem();\r
-  JMenuItem inputTextboxMenuItem = new JMenuItem();\r
-  JMenuItem quit = new JMenuItem();\r
-  JMenuItem aboutMenuItem = new JMenuItem();\r
-  JMenuItem documentationMenuItem = new JMenuItem();\r
-  FlowLayout flowLayout1 = new FlowLayout();\r
-  protected static JMenu windowMenu = new JMenu();\r
-  JMenu toolsMenu = new JMenu();\r
-  JMenuItem preferences = new JMenuItem();\r
-  JMenuItem saveState = new JMenuItem();\r
-  JMenuItem loadState = new JMenuItem();\r
-  JMenu jMenu1 = new JMenu();\r
-  public GDesktop()\r
-  {\r
-    try\r
-    {\r
-      jbInit();\r
-      this.setJMenuBar(DesktopMenubar);\r
-    }\r
-    catch(Exception e)\r
+    protected static JMenu windowMenu = new JMenu();\r
+    JMenuBar desktopMenubar = new JMenuBar();\r
+    JMenu FileMenu = new JMenu();\r
+    JMenu HelpMenu = new JMenu();\r
+    protected JMenu VamsasMenu = new JMenu();\r
+    JMenuItem inputLocalFileMenuItem = new JMenuItem();\r
+    JMenuItem inputURLMenuItem = new JMenuItem();\r
+    JMenuItem inputTextboxMenuItem = new JMenuItem();\r
+    JMenuItem quit = new JMenuItem();\r
+    JMenuItem aboutMenuItem = new JMenuItem();\r
+    JMenuItem documentationMenuItem = new JMenuItem();\r
+    FlowLayout flowLayout1 = new FlowLayout();\r
+    JMenu toolsMenu = new JMenu();\r
+    JMenuItem preferences = new JMenuItem();\r
+    JMenuItem saveState = new JMenuItem();\r
+    JMenuItem loadState = new JMenuItem();\r
+    JMenu inputMenu = new JMenu();\r
+  protected JMenuItem vamsasLoad = new JMenuItem();\r
+  JMenuItem inputSequence = new JMenuItem();\r
+  protected JMenuItem vamsasStop = new JMenuItem();\r
+  JMenuItem closeAll = new JMenuItem();\r
+  JMenuItem raiseRelated = new JMenuItem();\r
+  JMenuItem minimizeAssociated = new JMenuItem();\r
+\r
+  /**\r
+     * Creates a new GDesktop object.\r
+     */\r
+    public GDesktop()\r
     {\r
-      e.printStackTrace();\r
+        try\r
+        {\r
+            jbInit();\r
+            this.setJMenuBar(desktopMenubar);\r
+        }\r
+        catch (Exception e)\r
+        {\r
+            e.printStackTrace();\r
+        }\r
+\r
+        if (!System.getProperty("os.name").startsWith("Mac"))\r
+        {\r
+          FileMenu.setMnemonic('F');\r
+          inputLocalFileMenuItem.setMnemonic('L');\r
+          VamsasMenu.setMnemonic('V');\r
+          inputURLMenuItem.setMnemonic('U');\r
+          inputTextboxMenuItem.setMnemonic('C');\r
+          quit.setMnemonic('Q');\r
+          saveState.setMnemonic('S');\r
+          loadState.setMnemonic('L');\r
+          inputMenu.setMnemonic('I');\r
+        }\r
     }\r
 \r
-  }\r
-  private void jbInit() throws Exception\r
-  {\r
-    FileMenu.setMnemonic('F');\r
-    FileMenu.setText("File");\r
-    HelpMenu.setText("Help");\r
-    inputLocalFileMenuItem.setMnemonic('L');\r
-    inputLocalFileMenuItem.setText("from File");\r
-    inputLocalFileMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @throws Exception DOCUMENT ME!\r
+     */\r
+    private void jbInit() throws Exception\r
     {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        inputLocalFileMenuItem_actionPerformed(e);\r
-      }\r
-    });\r
-    inputURLMenuItem.setMnemonic('U');\r
-    inputURLMenuItem.setText("from URL");\r
-    inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        inputURLMenuItem_actionPerformed(e);\r
-      }\r
-    });\r
-    inputTextboxMenuItem.setMnemonic('C');\r
-    inputTextboxMenuItem.setText("from Textbox");\r
-    inputTextboxMenuItem.addActionListener(new java.awt.event.ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        inputTextboxMenuItem_actionPerformed(e);\r
-      }\r
-    });\r
-    quit.setMnemonic('Q');\r
-    quit.setText("Quit");\r
-    quit.addActionListener(new java.awt.event.ActionListener()\r
+        FileMenu.setText("File");\r
+        HelpMenu.setText("Help");\r
+        VamsasMenu.setText("Vamsas");\r
+        VamsasMenu.setToolTipText("Share data with other vamsas applications.");\r
+        inputLocalFileMenuItem.setText("from File");\r
+    inputLocalFileMenuItem.setAccelerator(javax.swing.KeyStroke.getKeyStroke(\r
+        java.awt.event.KeyEvent.VK_O, Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(), false));\r
+    inputLocalFileMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    inputLocalFileMenuItem_actionPerformed(null);\r
+                }\r
+            });\r
+        inputURLMenuItem.setText("from URL");\r
+        inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    inputURLMenuItem_actionPerformed(null);\r
+                }\r
+            });\r
+        inputTextboxMenuItem.setText("from Textbox");\r
+        inputTextboxMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    inputTextboxMenuItem_actionPerformed(null);\r
+                }\r
+            });\r
+        quit.setText("Quit");\r
+        quit.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    quit();\r
+                }\r
+            });\r
+        aboutMenuItem.setText("About");\r
+        aboutMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    aboutMenuItem_actionPerformed(e);\r
+                }\r
+            });\r
+        documentationMenuItem.setText("Documentation");\r
+        documentationMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    documentationMenuItem_actionPerformed(e);\r
+                }\r
+            });\r
+        this.getContentPane().setLayout(flowLayout1);\r
+        windowMenu.setText("Window");\r
+        preferences.setText("Preferences...");\r
+        preferences.addActionListener(new ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    preferences_actionPerformed(e);\r
+                }\r
+            });\r
+        toolsMenu.setText("Tools");\r
+        saveState.setText("Save Project");\r
+        saveState.addActionListener(new ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    saveState_actionPerformed(e);\r
+                }\r
+            });\r
+        loadState.setText("Load Project");\r
+        loadState.addActionListener(new ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    loadState_actionPerformed(e);\r
+                }\r
+            });\r
+        inputMenu.setText("Input Alignment");\r
+    vamsasLoad.setText("Start Vamsas Session...");\r
+    vamsasLoad.setVisible(false);\r
+    vamsasLoad.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-        quit_actionPerformed(e);\r
+        vamsasLoad_actionPerformed(e);\r
       }\r
     });\r
-    aboutMenuItem.setText("About");\r
-    aboutMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+    inputSequence.setText("Fetch Sequence(s)...");\r
+    inputSequence.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-        aboutMenuItem_actionPerformed(e);\r
+        inputSequence_actionPerformed(e);\r
       }\r
     });\r
-    documentationMenuItem.setText("Documentation");\r
-    documentationMenuItem.addActionListener(new java.awt.event.ActionListener()\r
+    vamsasStop.setText("Stop Vamsas Session");\r
+    vamsasStop.setVisible(false);\r
+    vamsasStop.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-        documentationMenuItem_actionPerformed(e);\r
+        vamsasStop_actionPerformed(e);\r
       }\r
     });\r
-    this.getContentPane().setLayout(flowLayout1);\r
-    windowMenu.setText("Window");\r
-    preferences.setText("Preferences...");\r
-    preferences.addActionListener(new ActionListener()\r
+    closeAll.setText("Close All");\r
+    closeAll.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-\r
-        preferences_actionPerformed(e);\r
+        closeAll_actionPerformed(e);\r
       }\r
     });\r
-    toolsMenu.setText("Tools");\r
-    saveState.setMnemonic('S');\r
-    saveState.setText("Save Project");\r
-    saveState.addActionListener(new ActionListener()\r
+    raiseRelated.setText("Raise Associated Windows");\r
+    raiseRelated.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-        saveState_actionPerformed(e);\r
+        raiseRelated_actionPerformed(e);\r
       }\r
     });\r
-    loadState.setMnemonic('L');\r
-    loadState.setText("Load Project");\r
-    loadState.addActionListener(new ActionListener()\r
+    minimizeAssociated.setText("Minimize Associated Windows");\r
+    minimizeAssociated.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
       {\r
-        loadState_actionPerformed(e);\r
+        minimizeAssociated_actionPerformed(e);\r
       }\r
     });\r
-    jMenu1.setMnemonic('I');\r
-    jMenu1.setText("Input Alignment");\r
-    DesktopMenubar.add(FileMenu);\r
-    DesktopMenubar.add(toolsMenu);\r
-    DesktopMenubar.add(HelpMenu);\r
-    DesktopMenubar.add(windowMenu);\r
-    FileMenu.addSeparator();\r
-    FileMenu.add(jMenu1);\r
+    desktopMenubar.add(FileMenu);\r
+    desktopMenubar.add(toolsMenu);\r
+    VamsasMenu.setVisible(false);\r
+    desktopMenubar.add(VamsasMenu);\r
+    desktopMenubar.add(HelpMenu);\r
+    desktopMenubar.add(windowMenu);\r
+    FileMenu.add(inputMenu);\r
+    FileMenu.add(inputSequence);\r
     FileMenu.addSeparator();\r
     FileMenu.add(saveState);\r
     FileMenu.add(loadState);\r
@@ -157,52 +239,141 @@ public class GDesktop extends JFrame
     FileMenu.add(quit);\r
     HelpMenu.add(aboutMenuItem);\r
     HelpMenu.add(documentationMenuItem);\r
+    VamsasMenu.add(vamsasLoad);\r
+    VamsasMenu.add(vamsasStop);\r
     toolsMenu.add(preferences);\r
-    jMenu1.add(inputLocalFileMenuItem);\r
-    jMenu1.add(inputURLMenuItem);\r
-    jMenu1.add(inputTextboxMenuItem);\r
-\r
+    inputMenu.add(inputLocalFileMenuItem);\r
+    inputMenu.add(inputURLMenuItem);\r
+    inputMenu.add(inputTextboxMenuItem);\r
+    windowMenu.add(closeAll);\r
+    windowMenu.add(raiseRelated);\r
+    windowMenu.add(minimizeAssociated);\r
+    windowMenu.addSeparator();\r
+    //    inputMenu.add(vamsasLoad);\r
   }\r
 \r
-  protected void inputLocalFileMenuItem_actionPerformed(ActionEvent e)\r
-  { }\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void inputLocalFileMenuItem_actionPerformed(jalview.gui.AlignViewport av)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void inputURLMenuItem_actionPerformed(jalview.gui.AlignViewport av)\r
+    {\r
+    }\r
 \r
-  protected void inputURLMenuItem_actionPerformed(ActionEvent e)\r
-  {  }\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void inputTextboxMenuItem_actionPerformed(jalview.gui.AlignViewport av)\r
+    {\r
+    }\r
 \r
-  protected void inputTextboxMenuItem_actionPerformed(ActionEvent e)\r
-  { }\r
+    /**\r
+     * DOCUMENT ME!\r
+     */\r
+    protected void quit()\r
+    {\r
+    }\r
 \r
-  protected void quit_actionPerformed(ActionEvent e)\r
-  {  }\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void aboutMenuItem_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
 \r
-  protected void aboutMenuItem_actionPerformed(ActionEvent e)\r
-  { }\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void documentationMenuItem_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
 \r
-  protected void documentationMenuItem_actionPerformed(ActionEvent e)\r
-  {  }\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void SaveState_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
 \r
-  public void SaveState_actionPerformed(ActionEvent e)\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void preferences_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void saveState_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void loadState_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void loadJalviewAlign_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+  public void vamsasLoad_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r
 \r
-  protected void preferences_actionPerformed(ActionEvent e)\r
+  public void inputSequence_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+  public void vamsasStop_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r
 \r
-  public void saveState_actionPerformed(ActionEvent e)\r
+  public void closeAll_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r
 \r
-  public void loadState_actionPerformed(ActionEvent e)\r
+  public void raiseRelated_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r
 \r
-  public void loadJalviewAlign_actionPerformed(ActionEvent e)\r
+  public void minimizeAssociated_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r