JAL-1807 explicit imports (jalview.util)

[jalview.git] / src / jalview / jbgui / GFinder.java

diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java
index 7136831..1e748ce 100755 (executable)
--- a/src/jalview/jbgui/GFinder.java
+++ b/src/jalview/jbgui/GFinder.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,8 +20,10 @@
  */
 package jalview.jbgui;
 
-import jalview.datamodel.Alignment;
+import jalview.analysis.AlignSeq;
+import jalview.datamodel.AlignmentI;
 import jalview.io.FormatAdapter;
+import jalview.util.Comparison;
 import jalview.util.MessageManager;
 
 import java.awt.BorderLayout;
@@ -211,7 +213,7 @@ public class GFinder extends JPanel
         public void run()
         {
           String str = textfield.getText();
-          Alignment al = null;
+          AlignmentI al = null;
           try
           {
             al = new FormatAdapter().readFile(str, "Paste", "FASTA");
@@ -220,8 +222,8 @@ public class GFinder extends JPanel
           }
           if (al != null && al.getHeight() > 0)
           {
-            str = jalview.analysis.AlignSeq.extractGaps(
-                    jalview.util.Comparison.GapChars, al.getSequenceAt(0)
+            str = AlignSeq.extractGaps(
+                    Comparison.GapChars, al.getSequenceAt(0)
                             .getSequenceAsString());
 
             textfield.setText(str);