/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.jbgui;
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
-
-import jalview.datamodel.*;
-import jalview.io.*;
+import jalview.datamodel.AlignmentI;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
+import jalview.io.FormatAdapter;
import jalview.util.MessageManager;
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GridLayout;
+import java.awt.Insets;
+import java.awt.event.ActionEvent;
+import java.awt.event.KeyEvent;
+
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JScrollPane;
+import javax.swing.JTextArea;
+import javax.swing.SwingConstants;
+import javax.swing.SwingUtilities;
+import javax.swing.event.CaretEvent;
+import javax.swing.event.CaretListener;
+
public class GFinder extends JPanel
{
- JLabel jLabel1 = new JLabel();
+ JLabel jLabelFind = new JLabel();
protected JButton findAll = new JButton();
protected JButton findNext = new JButton();
- JPanel jPanel1 = new JPanel();
+ JPanel actionsPanel = new JPanel();
GridLayout gridLayout1 = new GridLayout();
- protected JButton createNewGroup = new JButton();
+ protected JButton createFeatures = new JButton();
JScrollPane jScrollPane1 = new JScrollPane();
protected JTextArea textfield = new JTextArea();
- BorderLayout borderLayout1 = new BorderLayout();
+ BorderLayout mainBorderLayout = new BorderLayout();
JPanel jPanel2 = new JPanel();
protected JCheckBox caseSensitive = new JCheckBox();
+ protected JCheckBox searchDescription = new JCheckBox();
+
+ GridLayout optionsGridLayout = new GridLayout();
+
public GFinder()
{
try
private void jbInit() throws Exception
{
- jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
- jLabel1.setText(MessageManager.getString("action.find"));
- this.setLayout(borderLayout1);
+ jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12));
+ jLabelFind.setText(MessageManager.getString("label.find"));
+ this.setLayout(mainBorderLayout);
findAll.setFont(new java.awt.Font("Verdana", 0, 12));
findAll.setText(MessageManager.getString("action.find_all"));
findAll.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
findAll_actionPerformed(e);
findNext.setText(MessageManager.getString("action.find_next"));
findNext.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
findNext_actionPerformed(e);
}
});
- jPanel1.setLayout(gridLayout1);
+ actionsPanel.setLayout(gridLayout1);
gridLayout1.setHgap(0);
gridLayout1.setRows(3);
gridLayout1.setVgap(2);
- createNewGroup.setEnabled(false);
- createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));
- createNewGroup.setMargin(new Insets(0, 0, 0, 0));
- createNewGroup.setText(MessageManager.getString("label.new_feature"));
- createNewGroup.addActionListener(new java.awt.event.ActionListener()
+ createFeatures.setEnabled(false);
+ createFeatures.setFont(new java.awt.Font("Verdana", 0, 12));
+ createFeatures.setMargin(new Insets(0, 0, 0, 0));
+ createFeatures.setText(MessageManager.getString("label.new_feature"));
+ createFeatures.addActionListener(new java.awt.event.ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- createNewGroup_actionPerformed(e);
+ createFeatures_actionPerformed();
}
});
textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
textfield.setLineWrap(true);
textfield.addCaretListener(new CaretListener()
{
+ @Override
public void caretUpdate(CaretEvent e)
{
textfield_caretUpdate(e);
});
textfield.addKeyListener(new java.awt.event.KeyAdapter()
{
+ @Override
public void keyPressed(KeyEvent e)
{
textfield_keyPressed(e);
}
});
- borderLayout1.setHgap(5);
- borderLayout1.setVgap(5);
+ mainBorderLayout.setHgap(5);
+ mainBorderLayout.setVgap(5);
jPanel4.setLayout(borderLayout2);
jPanel2.setPreferredSize(new Dimension(10, 1));
jPanel3.setPreferredSize(new Dimension(10, 1));
caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
caseSensitive.setText(MessageManager.getString("label.match_case"));
- jPanel1.add(findNext, null);
- jPanel1.add(findAll, null);
- jPanel1.add(createNewGroup, null);
- this.add(jLabel1, java.awt.BorderLayout.WEST);
- this.add(jPanel1, java.awt.BorderLayout.EAST);
+
+ searchDescription.setText(MessageManager
+ .getString("label.include_description"));
+
+ actionsPanel.add(findNext, null);
+ actionsPanel.add(findAll, null);
+ actionsPanel.add(createFeatures, null);
+ this.add(jLabelFind, java.awt.BorderLayout.WEST);
+ this.add(actionsPanel, java.awt.BorderLayout.EAST);
this.add(jPanel2, java.awt.BorderLayout.SOUTH);
this.add(jPanel3, java.awt.BorderLayout.NORTH);
this.add(jPanel4, java.awt.BorderLayout.CENTER);
- jPanel4.add(jScrollPane1, java.awt.BorderLayout.CENTER);
+ jPanel4.add(jScrollPane1, java.awt.BorderLayout.NORTH);
jScrollPane1.getViewport().add(textfield);
- jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH);
- jPanel4.add(caseSensitive, java.awt.BorderLayout.SOUTH);
+
+ JPanel optionsPanel = new JPanel();
+
+ optionsGridLayout.setHgap(0);
+ optionsGridLayout.setRows(2);
+ optionsGridLayout.setVgap(2);
+ optionsPanel.setLayout(optionsGridLayout);
+ optionsPanel.add(caseSensitive, null);
+ optionsPanel.add(searchDescription, null);
+
+ jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST);
}
protected void findNext_actionPerformed(ActionEvent e)
}
}
- public void createNewGroup_actionPerformed(ActionEvent e)
+ public void createFeatures_actionPerformed()
{
}
{
SwingUtilities.invokeLater(new Runnable()
{
+ @Override
public void run()
{
String str = textfield.getText();
- Alignment al = null;
+ AlignmentI al = null;
try
{
- al = new FormatAdapter().readFile(str, "Paste", "FASTA");
+ al = new FormatAdapter().readFile(str, DataSourceType.PASTE,
+ FileFormat.Fasta);
} catch (Exception ex)
{
}