/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.jbgui;\r
\r
import java.awt.*;\r
import java.awt.event.*;\r
-\r
import javax.swing.*;\r
+import javax.swing.event.*;\r
+import jalview.io.FormatAdapter;\r
+import jalview.datamodel.SequenceI;\r
+import java.awt.datatransfer.DataFlavor;\r
+import jalview.io.IdentifyFile;\r
\r
+public class GFinder\r
+ extends JPanel\r
+{\r
+ JLabel jLabel1 = new JLabel();\r
+ protected JButton findAll = new JButton();\r
+ protected JButton findNext = new JButton();\r
+ JPanel jPanel1 = new JPanel();\r
+ GridLayout gridLayout1 = new GridLayout();\r
+ protected JButton createNewGroup = new JButton();\r
+ JScrollPane jScrollPane1 = new JScrollPane();\r
+ protected JTextArea textfield = new JTextArea();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ JPanel jPanel2 = new JPanel();\r
+ JPanel jPanel3 = new JPanel();\r
+ JPanel jPanel4 = new JPanel();\r
+ BorderLayout borderLayout2 = new BorderLayout();\r
+ JPanel jPanel5 = new JPanel();\r
+ JPanel jPanel6 = new JPanel();\r
+ public GFinder()\r
+ {\r
+ try\r
+ {\r
+ jbInit();\r
+ }\r
+ catch (Exception e)\r
+ {\r
+ e.printStackTrace();\r
+ }\r
+ }\r
\r
-public class GFinder extends JPanel {\r
- JLabel jLabel1 = new JLabel();\r
- protected JTextField textfield = new JTextField();\r
- protected JButton findAll = new JButton();\r
- protected JButton findNext = new JButton();\r
- JPanel jPanel1 = new JPanel();\r
- GridLayout gridLayout1 = new GridLayout();\r
- protected JButton createNewGroup = new JButton();\r
-\r
- public GFinder() {\r
- try {\r
- jbInit();\r
- } catch (Exception e) {\r
- e.printStackTrace();\r
+ private void jbInit()\r
+ throws Exception\r
+ {\r
+ jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ jLabel1.setText("Find");\r
+ this.setLayout(borderLayout1);\r
+ findAll.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ findAll.setText("Find all");\r
+ findAll.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ findAll_actionPerformed(e);\r
+ }\r
+ });\r
+ findNext.setEnabled(false);\r
+ findNext.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ findNext.setText("Find Next");\r
+ findNext.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ findNext_actionPerformed(e);\r
+ }\r
+ });\r
+ jPanel1.setLayout(gridLayout1);\r
+ gridLayout1.setHgap(0);\r
+ gridLayout1.setRows(3);\r
+ gridLayout1.setVgap(2);\r
+ createNewGroup.setEnabled(false);\r
+ createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));\r
+ createNewGroup.setToolTipText("");\r
+ createNewGroup.setMargin(new Insets(0, 0, 0, 0));\r
+ createNewGroup.setText("Create new group");\r
+ createNewGroup.addActionListener(new java.awt.event.ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ createNewGroup_actionPerformed(e);\r
+ }\r
+ });\r
+ textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));\r
+ textfield.setText("");\r
+ textfield.setLineWrap(true);\r
+ textfield.addCaretListener(new CaretListener()\r
+ {\r
+ public void caretUpdate(CaretEvent e)\r
+ {\r
+ textfield_caretUpdate(e);\r
+ }\r
+ });\r
+ textfield.addKeyListener(new java.awt.event.KeyAdapter() {\r
+ public void keyPressed(KeyEvent e) {\r
+ textfield_keyPressed(e);\r
}\r
- }\r
+ });\r
\r
- private void jbInit() throws Exception {\r
- jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));\r
- jLabel1.setText("Find");\r
- jLabel1.setBounds(new Rectangle(3, 30, 34, 15));\r
- this.setLayout(null);\r
- textfield.setFont(new java.awt.Font("Verdana", 0, 12));\r
- textfield.setText("");\r
- textfield.setBounds(new Rectangle(40, 27, 133, 21));\r
- textfield.addKeyListener(new java.awt.event.KeyAdapter() {\r
- public void keyTyped(KeyEvent e) {\r
- textfield_keyTyped(e);\r
- }\r
- });\r
- textfield.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- textfield_actionPerformed(e);\r
- }\r
- });\r
- findAll.setFont(new java.awt.Font("Verdana", 0, 12));\r
- findAll.setText("Find all");\r
- findAll.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- findAll_actionPerformed(e);\r
- }\r
- });\r
- findNext.setEnabled(false);\r
- findNext.setFont(new java.awt.Font("Verdana", 0, 12));\r
- findNext.setText("Find Next");\r
- findNext.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- findNext_actionPerformed(e);\r
- }\r
- });\r
- jPanel1.setBounds(new Rectangle(180, 5, 141, 64));\r
- jPanel1.setLayout(gridLayout1);\r
- gridLayout1.setHgap(0);\r
- gridLayout1.setRows(3);\r
- gridLayout1.setVgap(2);\r
- createNewGroup.setEnabled(false);\r
- createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));\r
- createNewGroup.setToolTipText("");\r
- createNewGroup.setMargin(new Insets(0, 0, 0, 0));\r
- createNewGroup.setText("Create new group");\r
- createNewGroup.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- createNewGroup_actionPerformed(e);\r
- }\r
- });\r
- jPanel1.add(findNext, null);\r
- jPanel1.add(findAll, null);\r
- jPanel1.add(createNewGroup, null);\r
- this.add(textfield, null);\r
- this.add(jLabel1, null);\r
- this.add(jPanel1, null);\r
- }\r
+ borderLayout1.setHgap(5);\r
+ borderLayout1.setVgap(5);\r
+ jPanel4.setLayout(borderLayout2);\r
+ jPanel2.setPreferredSize(new Dimension(10, 1));\r
+ jPanel3.setPreferredSize(new Dimension(10, 1));\r
+ jPanel1.add(findNext, null);\r
+ jPanel1.add(findAll, null);\r
+ jPanel1.add(createNewGroup, null);\r
+ this.add(jLabel1, java.awt.BorderLayout.WEST);\r
+ this.add(jPanel1, java.awt.BorderLayout.EAST);\r
+ this.add(jPanel2, java.awt.BorderLayout.SOUTH);\r
+ this.add(jPanel3, java.awt.BorderLayout.NORTH);\r
+ this.add(jPanel4, java.awt.BorderLayout.CENTER);\r
+ jPanel4.add(jScrollPane1, java.awt.BorderLayout.CENTER);\r
+ jPanel4.add(jPanel5, java.awt.BorderLayout.SOUTH);\r
+ jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH);\r
+ jScrollPane1.getViewport().add(textfield);\r
+ }\r
\r
- protected void findNext_actionPerformed(ActionEvent e) {\r
- }\r
+ protected void findNext_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
\r
- protected void findAll_actionPerformed(ActionEvent e) {\r
- }\r
+ protected void findAll_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
\r
- protected void textfield_actionPerformed(ActionEvent e) {\r
- }\r
\r
- void textfield_keyTyped(KeyEvent e) {\r
- findNext.setEnabled(true);\r
+ protected void textfield_keyPressed(KeyEvent e)\r
+ {\r
+\r
+ if(e.getKeyCode()==KeyEvent.VK_ENTER)\r
+ {\r
+ e.consume();\r
+ findNext_actionPerformed(null);\r
}\r
+ findNext.setEnabled(true);\r
+ }\r
\r
- public void createNewGroup_actionPerformed(ActionEvent e) {\r
+ public void createNewGroup_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
+\r
+ public void textfield_caretUpdate(CaretEvent e)\r
+ {\r
+ if (textfield.getText().indexOf(">") > -1)\r
+ {\r
+ SwingUtilities.invokeLater(new Runnable()\r
+ {\r
+ public void run()\r
+ {\r
+ String str = textfield.getText();\r
+ SequenceI[] sequences = FormatAdapter.readFile(str, "Paste", "FASTA");\r
+ if(sequences!=null && sequences.length>0)\r
+ {\r
+ str = jalview.analysis.AlignSeq.extractGaps(\r
+ jalview.util.Comparison.GapChars, sequences[0].getSequence());\r
+\r
+ textfield.setText(str);\r
+ }\r
+ }\r
+ });\r
}\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff