JAL-2403 JAL-1483 changes to ScoreModelI hierarchy and signatures to

[jalview.git] / src / jalview / jbgui / GPCAPanel.java

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 774641c..24961c0 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -52,7 +52,7 @@ public class GPCAPanel extends JInternalFrame
 
   protected JComboBox<String> zCombobox = new JComboBox<String>();
 
-  protected JMenu scoreMatrixMenu = new JMenu();
+  protected JMenu scoreModelMenu = new JMenu();
 
   protected JMenu viewMenu = new JMenu();
 
@@ -226,14 +226,14 @@ public class GPCAPanel extends JInternalFrame
       {
       }
     });
-    scoreMatrixMenu.setText(MessageManager
+    scoreModelMenu.setText(MessageManager
             .getString("label.select_score_model"));
-    scoreMatrixMenu.addMenuListener(new MenuListener()
+    scoreModelMenu.addMenuListener(new MenuListener()
     {
       @Override
       public void menuSelected(MenuEvent e)
       {
-        scoreMatrix_menuSelected();
+        scoreModel_menuSelected();
       }
 
       @Override
@@ -312,7 +312,7 @@ public class GPCAPanel extends JInternalFrame
     // calcSettings.add(jvVersionSetting); // todo remove? JAL-2416
     calcSettings.add(nuclSetting);
     calcSettings.add(protSetting);
-    calcSettings.add(scoreMatrixMenu);
+    calcSettings.add(scoreModelMenu);
     statusPanel.setLayout(new GridLayout());
     statusBar.setFont(VERDANA_12);
     // statusPanel.setBackground(Color.lightGray);
@@ -348,7 +348,7 @@ public class GPCAPanel extends JInternalFrame
     viewMenu.add(associateViewsMenu);
   }
 
-  protected void scoreMatrix_menuSelected()
+  protected void scoreModel_menuSelected()
   {
     // TODO Auto-generated method stub