JAL-1400 add codebase and caller allowable codebase

[jalview.git] / src / jalview / jbgui / GPCAPanel.java

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 15d4b3e..94e8dca 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -38,9 +38,9 @@ public class GPCAPanel extends JInternalFrame
   protected JComboBox yCombobox = new JComboBox();
 
   protected JComboBox zCombobox = new JComboBox();
-  
+
   protected JButton resetButton = new JButton();
-  
+
   FlowLayout flowLayout1 = new FlowLayout();
 
   BorderLayout borderLayout1 = new BorderLayout();
@@ -73,14 +73,20 @@ public class GPCAPanel extends JInternalFrame
 
   protected JMenu associateViewsMenu = new JMenu();
 
-  protected JMenu calcSettings=new JMenu();
-  protected JCheckBoxMenuItem nuclSetting=new JCheckBoxMenuItem();
-  protected JCheckBoxMenuItem protSetting=new JCheckBoxMenuItem();
-  protected JCheckBoxMenuItem jvVersionSetting=new JCheckBoxMenuItem();
-  
+  protected JMenu calcSettings = new JMenu();
+
+  protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
+
   protected JLabel statusBar = new JLabel();
+
   protected GridLayout statusPanelLayout = new GridLayout();
-  protected JPanel statusPanel=new JPanel();
+
+  protected JPanel statusPanel = new JPanel();
+
   public GPCAPanel()
   {
     try
@@ -137,7 +143,7 @@ public class GPCAPanel extends JInternalFrame
         xCombobox_actionPerformed(e);
       }
     });
-    resetButton.setFont(new java.awt.Font("Verdana",0,12));
+    resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
     resetButton.setText("Reset");
     resetButton.addActionListener(new java.awt.event.ActionListener()
     {
@@ -243,7 +249,7 @@ public class GPCAPanel extends JInternalFrame
     protSetting.setText("Protein matrix");
     nuclSetting.addActionListener(new ActionListener()
     {
-      
+
       @Override
       public void actionPerformed(ActionEvent arg0)
       {
@@ -252,7 +258,7 @@ public class GPCAPanel extends JInternalFrame
     });
     protSetting.addActionListener(new ActionListener()
     {
-      
+
       @Override
       public void actionPerformed(ActionEvent arg0)
       {
@@ -272,10 +278,10 @@ public class GPCAPanel extends JInternalFrame
     calcSettings.add(nuclSetting);
     calcSettings.add(protSetting);
     statusPanel.setLayout(statusPanelLayout);
-    statusBar.setFont(new java.awt.Font("Verdana",0,12));
-    //statusPanel.setBackground(Color.lightGray);
-    //statusBar.setBackground(Color.lightGray);
-    //statusPanel.add(statusBar, null);
+    statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
+    // statusPanel.setBackground(Color.lightGray);
+    // statusBar.setBackground(Color.lightGray);
+    // statusPanel.add(statusBar, null);
     JPanel panelBar = new JPanel(new BorderLayout());
     panelBar.add(jPanel2, BorderLayout.NORTH);
     panelBar.add(statusPanel, BorderLayout.SOUTH);
@@ -306,19 +312,19 @@ public class GPCAPanel extends JInternalFrame
   protected void resetButton_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void protSetting_actionPerfomed(ActionEvent arg0)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void outputPoints_actionPerformed(ActionEvent e)
@@ -388,6 +394,6 @@ public class GPCAPanel extends JInternalFrame
   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
   {
     // TODO Auto-generated method stub
-    
+
   }
 }