Sequence is char []

[jalview.git] / src / jalview / jbgui / GPairwiseAlignPanel.java

diff --git a/src/jalview/jbgui/GPairwiseAlignPanel.java b/src/jalview/jbgui/GPairwiseAlignPanel.java
index 96a1a40..ab4eb54 100755 (executable)
--- a/src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/src/jalview/jbgui/GPairwiseAlignPanel.java
@@ -1,20 +1,20 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
 package jalview.jbgui;\r
 \r
@@ -24,30 +24,52 @@ import java.awt.event.*;
 import javax.swing.*;\r
 \r
 \r
-public class GPairwiseAlignPanel extends JPanel {\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class GPairwiseAlignPanel extends JPanel\r
+{\r
     protected JScrollPane scrollPane = new JScrollPane();\r
     protected JTextArea textarea = new JTextArea();\r
     protected JButton viewInEditorButton = new JButton();\r
     JPanel jPanel1 = new JPanel();\r
     BorderLayout borderLayout1 = new BorderLayout();\r
 \r
-    public GPairwiseAlignPanel() {\r
-        try {\r
+    /**\r
+     * Creates a new GPairwiseAlignPanel object.\r
+     */\r
+    public GPairwiseAlignPanel()\r
+    {\r
+        try\r
+        {\r
             jbInit();\r
-        } catch (Exception e) {\r
+        }\r
+        catch (Exception e)\r
+        {\r
             e.printStackTrace();\r
         }\r
     }\r
 \r
-    private void jbInit() throws Exception {\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @throws Exception DOCUMENT ME!\r
+     */\r
+    private void jbInit() throws Exception\r
+    {\r
         this.setLayout(borderLayout1);\r
         textarea.setFont(new java.awt.Font("Monospaced", 0, 12));\r
         textarea.setText("");\r
         textarea.setWrapStyleWord(false);\r
         viewInEditorButton.setFont(new java.awt.Font("Verdana", 0, 12));\r
         viewInEditorButton.setText("View in alignment editor");\r
-        viewInEditorButton.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
+        viewInEditorButton.addActionListener(new java.awt.event.ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
                     viewInEditorButton_actionPerformed(e);\r
                 }\r
             });\r
@@ -57,6 +79,12 @@ public class GPairwiseAlignPanel extends JPanel {
         jPanel1.add(viewInEditorButton, null);\r
     }\r
 \r
-    protected void viewInEditorButton_actionPerformed(ActionEvent e) {\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    protected void viewInEditorButton_actionPerformed(ActionEvent e)\r
+    {\r
     }\r
 }\r