/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
/**
* DOCUMENT ME!
- *
+ *
* @author $author$
* @version $Revision$
*/
-public class GPreferences
- extends JPanel
+public class GPreferences extends JPanel
{
JTabbedPane tabbedPane = new JTabbedPane();
JButton ok = new JButton();
+
JButton cancel = new JButton();
+
JPanel okCancelPanel = new JPanel();
+
BorderLayout borderLayout1 = new BorderLayout();
+
protected JCheckBox quality = new JCheckBox();
+
JPanel visualTab = new JPanel();
+
protected JCheckBox fullScreen = new JCheckBox();
+
protected JCheckBox conservation = new JCheckBox();
+
protected JCheckBox identity = new JCheckBox();
+
protected JCheckBox annotations = new JCheckBox();
+
JLabel gapLabel = new JLabel();
+
protected JComboBox colour = new JComboBox();
+
JLabel colourLabel = new JLabel();
+
JLabel fontLabel = new JLabel();
+
protected JComboBox fontSizeCB = new JComboBox();
+
protected JComboBox fontStyleCB = new JComboBox();
+
protected JComboBox fontNameCB = new JComboBox();
+
protected JComboBox gapSymbolCB = new JComboBox();
+
protected JCheckBox startupCheckbox = new JCheckBox();
+
protected JTextField startupFileTextfield = new JTextField();
+
JPanel connectTab = new JPanel();
+
JLabel serverLabel = new JLabel();
+
protected JList linkURLList = new JList();
+
protected JTextField proxyServerTB = new JTextField();
+
protected JTextField proxyPortTB = new JTextField();
+
JLabel portLabel = new JLabel();
+
JLabel browserLabel = new JLabel();
+
protected JTextField defaultBrowser = new JTextField();
+
JButton newLink = new JButton();
+
JButton editLink = new JButton();
+
JButton deleteLink = new JButton();
+
JScrollPane linkScrollPane = new JScrollPane();
+
JPanel linkPanel = new JPanel();
+
BorderLayout borderLayout2 = new BorderLayout();
+
JPanel editLinkButtons = new JPanel();
+
GridLayout gridLayout1 = new GridLayout();
+
protected JList linkNameList = new JList();
+
JPanel linkPanel2 = new JPanel();
+
BorderLayout borderLayout3 = new BorderLayout();
+
protected JCheckBox useProxy = new JCheckBox();
+
JPanel jPanel1 = new JPanel();
+
TitledBorder titledBorder1 = new TitledBorder("Proxy Server");
+
TitledBorder titledBorder2 = new TitledBorder("File Output");
+
GridBagLayout gridBagLayout2 = new GridBagLayout();
+
GridBagLayout gridBagLayout1 = new GridBagLayout();
+
GridBagLayout gridBagLayout3 = new GridBagLayout();
+
protected JComboBox sortby = new JComboBox();
+
JLabel sortLabel = new JLabel();
+
JPanel jPanel2 = new JPanel();
+
GridLayout gridLayout2 = new GridLayout();
+
JPanel jPanel3 = new JPanel();
+
JPanel exportTab = new JPanel();
+
JLabel epsLabel = new JLabel();
+
protected JComboBox epsRendering = new JComboBox();
+
JLabel jLabel1 = new JLabel();
+
protected JCheckBox blcjv = new JCheckBox();
+
protected JCheckBox pileupjv = new JCheckBox();
+
protected JCheckBox clustaljv = new JCheckBox();
+
protected JCheckBox msfjv = new JCheckBox();
+
protected JCheckBox fastajv = new JCheckBox();
+
protected JCheckBox pfamjv = new JCheckBox();
+
FlowLayout flowLayout1 = new FlowLayout();
+
protected JCheckBox pirjv = new JCheckBox();
+
JPanel jPanel11 = new JPanel();
+
Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);
+
protected JCheckBox seqLimit = new JCheckBox();
+
GridLayout gridLayout3 = new GridLayout();
+
protected JCheckBox smoothFont = new JCheckBox();
+
JPanel calcTab = new JPanel();
+
protected JCheckBox autoCalculateConsCheck = new JCheckBox();
+
protected JCheckBox padGaps = new JCheckBox();
+
protected JCheckBox modellerOutput = new JCheckBox();
+
protected JPanel dasPanel = new JPanel();
+
BorderLayout borderLayout4 = new BorderLayout();
+
protected JCheckBox wrap = new JCheckBox();
+
protected JCheckBox rightAlign = new JCheckBox();
+
protected JCheckBox idItalics = new JCheckBox();
+
protected JCheckBox openoverv = new JCheckBox();
+ protected JCheckBox usagestats = new JCheckBox();
+ protected JCheckBox questionnaire = new JCheckBox();
+ protected JCheckBox versioncheck = new JCheckBox();
+
/**
* Creates a new GPreferences object.
*/
try
{
jbInit();
- }
- catch (Exception ex)
+ } catch (Exception ex)
{
ex.printStackTrace();
}
/**
* DOCUMENT ME!
- *
- * @throws Exception DOCUMENT ME!
+ *
+ * @throws Exception
+ * DOCUMENT ME!
*/
- private void jbInit()
- throws Exception
+ private void jbInit() throws Exception
{
this.setLayout(borderLayout1);
ok.setText("OK");
browserLabel.setText("Default Browser (Unix)");
defaultBrowser.setFont(verdana11);
defaultBrowser.setText("");
+ usagestats.setText("Send usage statistics");
+ usagestats.setFont(verdana11);
+ usagestats.setHorizontalAlignment(SwingConstants.RIGHT);
+ usagestats.setHorizontalTextPosition(SwingConstants.LEADING);
+ questionnaire.setText("Check for questionnaires");
+ questionnaire.setFont(verdana11);
+ questionnaire.setHorizontalAlignment(SwingConstants.RIGHT);
+ questionnaire.setHorizontalTextPosition(SwingConstants.LEADING);
+ versioncheck.setText("Check for latest version");
+ versioncheck.setFont(verdana11);
+ versioncheck.setHorizontalAlignment(SwingConstants.RIGHT);
+ versioncheck.setHorizontalTextPosition(SwingConstants.LEADING);
newLink.setText("New");
newLink.addActionListener(new java.awt.event.ActionListener()
{
smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);
smoothFont.setText("Smooth Font");
calcTab.setLayout(null);
- autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+ autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN,
+ 11));
autoCalculateConsCheck.setText("AutoCalculate Consensus");
autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));
padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
this.add(tabbedPane, java.awt.BorderLayout.CENTER);
this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);
- jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0
- , GridBagConstraints.WEST, GridBagConstraints.NONE,
- new Insets(0, 2, 4, 0), 5, 0));
- jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0
- , GridBagConstraints.WEST,
- GridBagConstraints.NONE,
- new Insets(0, 0, 4, 0), 11, 6));
- connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0
- , GridBagConstraints.CENTER, GridBagConstraints.BOTH,
- new Insets(16, 0, 0, 12), 359, -17));
- connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0
- , GridBagConstraints.CENTER, GridBagConstraints.BOTH,
- new Insets(21, 0, 35, 12), 4, 6));
- connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0
- , GridBagConstraints.WEST, GridBagConstraints.NONE,
- new Insets(16, 0, 0, 0), 5, 1));
- jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0
- , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
- new Insets(0, 2, 4, 2), 54, 1));
- jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0
- , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
- new Insets(0, 2, 4, 0), 263, 1));
- connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0
- , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
- new Insets(15, 0, 0, 15), 307, 1));
-
- jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0
- , GridBagConstraints.WEST,
- GridBagConstraints.NONE,
- new Insets(0, 2, 5, 185), 2,
- -4));
+ jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0,
+ GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
+ 2, 4, 0), 5, 0));
+ jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0,
+ GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
+ 0, 4, 0), 11, 6));
+ connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0,
+ GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(
+ 16, 0, 0, 12), 359, -17));
+ connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0,
+ GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(
+ 21, 0, 35, 12), 4, 6));
+ connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.NONE,
+ new Insets(16, 0, 0, 0), 5, 1));
+ jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0,
+ GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4, 2), 54, 1));
+ jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0,
+ GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4, 0), 263, 1));
+ connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(15, 0, 0, 15), 307, 1));
+ connectTab.add(usagestats, new GridBagConstraints(0, 4, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+ connectTab.add(questionnaire, new GridBagConstraints(1, 4, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+ connectTab.add(versioncheck, new GridBagConstraints(0, 5, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+
+ jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0,
+ GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
+ 2, 5, 185), 2, -4));
DefaultListCellRenderer dlcr = new DefaultListCellRenderer();
dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);
gapSymbolCB.setRenderer(dlcr);
/**
* DOCUMENT ME!
- *
- * @param e DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
*/
public void ok_actionPerformed(ActionEvent e)
{
/**
* DOCUMENT ME!
- *
- * @param e DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
*/
public void cancel_actionPerformed(ActionEvent e)
{
/**
* DOCUMENT ME!
- *
- * @param e DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
*/
public void annotations_actionPerformed(ActionEvent e)
{
git://source.jalview.org / jalview.git / blobdiff