Resize for mac
[jalview.git] / src / jalview / jbgui / GPreferences.java
index 1ead51c..50c4cf5 100755 (executable)
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.jbgui;\r
 \r
-import javax.swing.*;\r
 import java.awt.*;\r
-import java.awt.event.ActionListener;\r
-import java.awt.event.ActionEvent;\r
+\r
+import javax.swing.*;\r
 import javax.swing.border.TitledBorder;\r
-import java.awt.event.MouseAdapter;\r
-import java.awt.event.MouseEvent;\r
+import java.awt.event.*;\r
+import javax.swing.event.*;\r
+\r
 \r
-public class GPreferences\r
-    extends JPanel\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class GPreferences extends JPanel\r
 {\r
-  public GPreferences()\r
-  {\r
-    try\r
-    {\r
-      jbInit();\r
-    }\r
-    catch (Exception ex)\r
+    JTabbedPane tabbedPane = new JTabbedPane();\r
+\r
+    JButton ok = new JButton();\r
+    JButton cancel = new JButton();\r
+    JPanel okCancelPanel = new JPanel();\r
+    BorderLayout borderLayout1 = new BorderLayout();\r
+    protected JCheckBox quality = new JCheckBox();\r
+    JPanel visualTab = new JPanel();\r
+    protected JCheckBox fullID = new JCheckBox();\r
+    protected JCheckBox fullScreen = new JCheckBox();\r
+    protected JCheckBox conservation = new JCheckBox();\r
+    protected JCheckBox identity = new JCheckBox();\r
+    protected JCheckBox annotations = new JCheckBox();\r
+    JLabel gapLabel = new JLabel();\r
+    protected JComboBox colour = new JComboBox();\r
+    JLabel colourLabel = new JLabel();\r
+    JLabel fontLabel = new JLabel();\r
+    protected JComboBox fontSizeCB = new JComboBox();\r
+    protected JComboBox fontStyleCB = new JComboBox();\r
+    protected JComboBox fontNameCB = new JComboBox();\r
+    protected JComboBox gapSymbolCB = new JComboBox();\r
+    protected JCheckBox startupCheckbox = new JCheckBox();\r
+    protected JTextField startupFileTextfield = new JTextField();\r
+  JPanel connectTab = new JPanel();\r
+  JLabel serverLabel = new JLabel();\r
+  protected JList linkURLList = new JList();\r
+  protected JTextField proxyServerTB = new JTextField();\r
+  protected JTextField proxyPortTB = new JTextField();\r
+  JLabel portLabel = new JLabel();\r
+  JLabel browserLabel = new JLabel();\r
+  protected JTextField defaultBrowser = new JTextField();\r
+  JButton newLink = new JButton();\r
+  JButton editLink = new JButton();\r
+  JButton deleteLink = new JButton();\r
+  JScrollPane linkScrollPane = new JScrollPane();\r
+  JPanel linkPanel = new JPanel();\r
+  BorderLayout borderLayout2 = new BorderLayout();\r
+  JPanel editLinkButtons = new JPanel();\r
+  GridLayout gridLayout1 = new GridLayout();\r
+  protected JList linkNameList = new JList();\r
+  JPanel linkPanel2 = new JPanel();\r
+  BorderLayout borderLayout3 = new BorderLayout();\r
+  protected JCheckBox useProxy = new JCheckBox();\r
+  JPanel jPanel1 = new JPanel();\r
+  TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
+  GridBagLayout gridBagLayout2 = new GridBagLayout();\r
+  GridBagLayout gridBagLayout1 = new GridBagLayout();\r
+  GridBagLayout gridBagLayout3 = new GridBagLayout();\r
+  protected JComboBox sortby = new JComboBox();\r
+  JLabel sortLabel = new JLabel();\r
+  JPanel jPanel2 = new JPanel();\r
+  GridLayout gridLayout2 = new GridLayout();\r
+  JPanel jPanel3 = new JPanel();\r
+  JPanel exportTab = new JPanel();\r
+  JLabel epsLabel = new JLabel();\r
+  protected JComboBox epsRendering = new JComboBox();\r
+  /**\r
+     * Creates a new GPreferences object.\r
+     */\r
+    public GPreferences()\r
     {\r
-      ex.printStackTrace();\r
+        try\r
+        {\r
+            jbInit();\r
+        }\r
+        catch (Exception ex)\r
+        {\r
+            ex.printStackTrace();\r
+        }\r
     }\r
-  }\r
 \r
-  private void jbInit()\r
-      throws Exception\r
-  {\r
-    this.setLayout(borderLayout1);\r
-    ok.setText("OK");\r
-    ok.addActionListener(new ActionListener()\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @throws Exception DOCUMENT ME!\r
+     */\r
+    private void jbInit() throws Exception\r
     {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        ok_actionPerformed(e);\r
-      }\r
-    });\r
-    cancel.setText("Cancel");\r
-    cancel.addActionListener(new ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        cancel_actionPerformed(e);\r
-      }\r
-    });\r
-    visual.setLayout(null);\r
-    quality.setEnabled(false);\r
-    quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
-    quality.setSelected(true);\r
-    quality.setText("Quality");\r
-    quality.setBounds(new Rectangle(248, 53, 81, 23));\r
-    jPanel2.setBorder(titledBorder1);\r
-    jPanel2.setBounds(new Rectangle(9, 20, 442, 241));\r
-    jPanel2.setLayout(null);\r
-    fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    fullID.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    fullID.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        this.setLayout(borderLayout1);\r
+        ok.setText("OK");\r
+        ok.addActionListener(new ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    ok_actionPerformed(e);\r
+                }\r
+            });\r
+        cancel.setText("Cancel");\r
+        cancel.addActionListener(new ActionListener()\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    cancel_actionPerformed(e);\r
+                }\r
+            });\r
+        quality.setEnabled(false);\r
+        quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        quality.setSelected(true);\r
+        quality.setText("Quality");\r
+    visualTab.setBorder(new TitledBorder("Open new alignment"));\r
+    visualTab.setLayout(null);\r
+        fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        fullID.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        fullID.setHorizontalTextPosition(SwingConstants.LEFT);\r
+    fullID.setMargin(new Insets(4, 2, 2, 0));\r
     fullID.setText("Full Sequence ID");\r
-    fullID.setBounds(new Rectangle(9, 78, 129, 23));\r
     fullScreen.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
+    fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
     fullScreen.setText("Maximise Window");\r
-    fullScreen.setBounds(new Rectangle(5, 29, 132, 23));\r
     conservation.setEnabled(false);\r
-    conservation.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
-    conservation.setSelected(true);\r
-    conservation.setText("Conservation");\r
-    conservation.setBounds(new Rectangle(137, 53, 113, 23));\r
+        conservation.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        conservation.setSelected(true);\r
+        conservation.setText("Conservation");\r
     identity.setEnabled(false);\r
-    identity.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
-    identity.setSelected(true);\r
-    identity.setText("Consensus");\r
-    identity.setBounds(new Rectangle(326, 53, 99, 23));\r
+        identity.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        identity.setSelected(true);\r
+        identity.setText("Consensus");\r
     annotations.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
+    annotations.setMargin(new Insets(2, 4, 2, 0));\r
     annotations.setSelected(true);\r
-    annotations.setText("Show Annotations");\r
-    annotations.setBounds(new Rectangle(10, 53, 128, 23));\r
+        annotations.setText("Show Annotations");\r
     annotations.addActionListener(new ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        annotations_actionPerformed(e);\r
-      }\r
-    });\r
-    jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    jLabel1.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    jLabel1.setText("Gap Symbol");\r
-    jLabel1.setBounds(new Rectangle(41, 142, 76, 15));\r
+            {\r
+                public void actionPerformed(ActionEvent e)\r
+                {\r
+                    annotations_actionPerformed(e);\r
+                }\r
+            });\r
+        gapLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        gapLabel.setText("Gap Symbol ");\r
     colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    colour.setBounds(new Rectangle(121, 168, 154, 21));\r
-    jLabel2.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    jLabel2.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    jLabel2.setText("Colour");\r
-    jLabel2.setBounds(new Rectangle(60, 172, 58, 15));\r
-    jLabel3.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    jLabel3.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    jLabel3.setText("Font");\r
-    jLabel3.setBounds(new Rectangle(83, 114, 34, 15));\r
+        colour.setBounds(new Rectangle(148, 171, 154, 21));\r
+        colourLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        colourLabel.setText("Colour ");\r
+    fontLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        fontLabel.setText("Font ");\r
     fontSizeCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    fontSizeCB.setBounds(new Rectangle(304, 109, 49, 21));\r
-    fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    fontStyleCB.setBounds(new Rectangle(353, 109, 80, 21));\r
-    fontNameCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    fontNameCB.setBounds(new Rectangle(121, 109, 183, 21));\r
-    gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21));\r
-    startupCheckbox.setText("Open file");\r
-    startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23));\r
-    startupCheckbox.addActionListener(new ActionListener()\r
+        fontSizeCB.setBounds(new Rectangle(317, 111, 49, 21));\r
+        fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        fontStyleCB.setBounds(new Rectangle(365, 111, 70, 21));\r
+        fontNameCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        fontNameCB.setBounds(new Rectangle(148, 111, 169, 21));\r
+        gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        gapSymbolCB.setBounds(new Rectangle(148, 141, 67, 21));\r
+        startupCheckbox.setText("Open file");\r
+    startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
+        startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
+        startupCheckbox.setSelected(true);\r
+        startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+        startupFileTextfield.setBounds(new Rectangle(148, 232, 302, 20));\r
+        startupFileTextfield.addMouseListener(new MouseAdapter()\r
+            {\r
+                public void mouseClicked(MouseEvent e)\r
+                {\r
+                    if (e.getClickCount() > 1)\r
+                    {\r
+                        startupFileTextfield_mouseClicked();\r
+                    }\r
+                }\r
+            });\r
+\r
+     connectTab.setLayout(gridBagLayout3);\r
+    serverLabel.setText("Address");\r
+    serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+    serverLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    proxyServerTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    proxyPortTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    portLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+    portLabel.setText("Port");\r
+    browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
+    browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
+    browserLabel.setText("Default Browser (Unix)");\r
+    defaultBrowser.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    defaultBrowser.setText("");\r
+    newLink.setText("New");\r
+    newLink.addActionListener(new java.awt.event.ActionListener() {\r
+      public void actionPerformed(ActionEvent e) {\r
+        newLink_actionPerformed(e);\r
+      }\r
+    });\r
+    editLink.setText("Edit");\r
+    editLink.addActionListener(new java.awt.event.ActionListener() {\r
+      public void actionPerformed(ActionEvent e) {\r
+        editLink_actionPerformed(e);\r
+      }\r
+    });\r
+    deleteLink.setText("Delete");\r
+    deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
+      public void actionPerformed(ActionEvent e) {\r
+        deleteLink_actionPerformed(e);\r
+      }\r
+    });\r
+\r
+    linkURLList.addListSelectionListener(new ListSelectionListener()\r
+         {\r
+            public void valueChanged(ListSelectionEvent e)\r
+            {\r
+               int index = linkURLList.getSelectedIndex();\r
+               linkNameList.setSelectedIndex(index);\r
+            }\r
+         });\r
+\r
+    linkNameList.addListSelectionListener(new ListSelectionListener()\r
+        {\r
+          public void valueChanged(ListSelectionEvent e)\r
+          {\r
+              int index = linkNameList.getSelectedIndex();\r
+              linkURLList.setSelectedIndex(index);\r
+          }\r
+        });\r
+\r
+    linkScrollPane.setBorder(null);\r
+    linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
+    linkPanel.setLayout(borderLayout2);\r
+    editLinkButtons.setLayout(gridLayout1);\r
+    gridLayout1.setRows(3);\r
+    linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
+    linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+    linkPanel2.setLayout(borderLayout3);\r
+    linkURLList.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+\r
+    defaultBrowser.addMouseListener(new MouseAdapter()\r
     {\r
-      public void actionPerformed(ActionEvent e)\r
+      public void mouseClicked(MouseEvent e)\r
       {\r
-        jCheckBox1_actionPerformed(e);\r
+        if (e.getClickCount() > 1)\r
+            {\r
+              defaultBrowser_mouseClicked(e);\r
+            }\r
       }\r
     });\r
-    startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
-    startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
-    startupCheckbox.setSelected(true);\r
-    startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
-    startupFileTextfield.setBounds(new Rectangle(122, 202, 309, 20));\r
-    startupFileTextfield.addMouseListener(new MouseAdapter()\r
+    useProxy.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
+    useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
+    useProxy.setText("Use a proxy server");\r
+    useProxy.addActionListener(new ActionListener()\r
     {\r
-      public void mouseClicked(MouseEvent e)\r
+      public void actionPerformed(ActionEvent e)\r
       {\r
-        startupFileTextfield_mouseClicked();\r
+        useProxy_actionPerformed();\r
       }\r
     });\r
-\r
+    jPanel1.setBorder(titledBorder1);\r
+    jPanel1.setLayout(gridBagLayout1);\r
+    sortby.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    sortby.setBounds(new Rectangle(148, 200, 302, 21));\r
+    sortLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+    sortLabel.setText("Sort by ");\r
+    jPanel2.setBounds(new Rectangle(7, 17, 138, 242));\r
+    jPanel2.setLayout(gridLayout2);\r
+    gridLayout2.setRows(8);\r
+    jPanel3.setBounds(new Rectangle(147, 46, 274, 26));\r
+    exportTab.setLayout(null);\r
+    epsLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+    epsLabel.setText("EPS Rendering Style");\r
+    epsLabel.setBounds(new Rectangle(3, 47, 134, 21));\r
+    epsRendering.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    epsRendering.setBounds(new Rectangle(145, 47, 286, 21));\r
+    jPanel2.add(fullScreen);\r
     jPanel2.add(annotations);\r
-    jPanel2.add(conservation);\r
-    jPanel2.add(quality);\r
     jPanel2.add(fullID);\r
-    jPanel2.add(gapSymbolCB);\r
-    jPanel2.add(jLabel1);\r
-    jPanel2.add(fontNameCB);\r
-    jPanel2.add(jLabel2);\r
-    jPanel2.add(jLabel3);\r
-    jPanel2.add(colour);\r
-    jPanel2.add(fontSizeCB);\r
-    jPanel2.add(fontStyleCB);\r
-    jPanel2.add(identity);\r
-    jPanel2.add(fullScreen);\r
+    jPanel2.add(fontLabel);\r
+    jPanel2.add(gapLabel);\r
+    jPanel2.add(colourLabel);\r
+    jPanel2.add(sortLabel);\r
     jPanel2.add(startupCheckbox);\r
-    jPanel2.add(startupFileTextfield);\r
-    jPanel1.add(ok);\r
-    jPanel1.add(cancel);\r
-    this.add(visaulTab, java.awt.BorderLayout.CENTER);\r
-    visaulTab.add(visual, "visual");\r
-    visual.add(jPanel2);\r
-    this.add(jPanel1, java.awt.BorderLayout.SOUTH);\r
+    visualTab.add(jPanel3);\r
+    jPanel3.add(conservation);\r
+    jPanel3.add(quality);\r
+    jPanel3.add(identity);\r
+    visualTab.add(sortby);\r
+    visualTab.add(colour);\r
+    visualTab.add(startupFileTextfield);\r
+    visualTab.add(fontNameCB);\r
+    visualTab.add(fontSizeCB);\r
+    visualTab.add(fontStyleCB);\r
+    visualTab.add(gapSymbolCB);\r
+    visualTab.add(jPanel2);\r
+\r
+    linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
+    editLinkButtons.add(newLink, null);\r
+    editLinkButtons.add(editLink, null);\r
+    editLinkButtons.add(deleteLink, null);\r
+    linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
+    linkScrollPane.getViewport().add(linkPanel2, null);\r
+    linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
+    linkPanel2.add(linkNameList, BorderLayout.WEST);\r
+        okCancelPanel.add(ok);\r
+        okCancelPanel.add(cancel);\r
+    this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
+\r
+        this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+    jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+        , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+        new Insets(0, 2, 4, 0), 5, 0));\r
+    jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
+                                                  , GridBagConstraints.WEST,\r
+                                                  GridBagConstraints.NONE,\r
+                                                  new Insets(0, 0, 4, 0), 11, 6));\r
+    connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
+        , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+        new Insets(16, 0, 0, 12), 359, -17));\r
+    connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
+        , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+        new Insets(21, 0, 35, 12), 4, 6));\r
+    connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+        , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+        new Insets(16, 0, 0, 0), 5, 1));\r
+    jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
+        , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+        new Insets(0, 2, 4, 2), 54, 1));\r
+    jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+        , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+        new Insets(0, 2, 4, 0), 263, 1));\r
+    connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+        , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+        new Insets(15, 0, 0, 15), 307, 1));\r
+\r
+    exportTab.add(epsLabel);\r
+    exportTab.add(epsRendering);\r
+\r
+    jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
+                                                 , GridBagConstraints.WEST,\r
+                                                 GridBagConstraints.NONE,\r
+                                                 new Insets(0, 2, 5, 185), 2,\r
+                                                 -4));\r
     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
-    dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
-    gapSymbolCB.setRenderer(dlcr);\r
+        dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
+        gapSymbolCB.setRenderer(dlcr);\r
 \r
+    tabbedPane.add(visualTab, "Visual");\r
+    tabbedPane.add(connectTab, "Connections");\r
+    tabbedPane.add(exportTab, "Export");\r
   }\r
 \r
-  JTabbedPane visaulTab = new JTabbedPane();\r
-  JPanel visual = new JPanel();\r
-  JButton ok = new JButton();\r
-  JButton cancel = new JButton();\r
-  JPanel jPanel1 = new JPanel();\r
-  BorderLayout borderLayout1 = new BorderLayout();\r
-  protected JCheckBox quality = new JCheckBox();\r
-  JPanel jPanel2 = new JPanel();\r
-  TitledBorder titledBorder1 = new TitledBorder("Open new alignment");\r
-  protected JCheckBox fullID = new JCheckBox();\r
-  protected JCheckBox fullScreen = new JCheckBox();\r
-  protected JCheckBox conservation = new JCheckBox();\r
-  protected JCheckBox identity = new JCheckBox();\r
-  protected JCheckBox annotations = new JCheckBox();\r
-  JLabel jLabel1 = new JLabel();\r
-  protected JComboBox colour = new JComboBox();\r
-  JLabel jLabel2 = new JLabel();\r
-  JLabel jLabel3 = new JLabel();\r
-  protected JComboBox fontSizeCB = new JComboBox();\r
-  protected JComboBox fontStyleCB = new JComboBox();\r
-  protected JComboBox fontNameCB = new JComboBox();\r
-  protected JComboBox gapSymbolCB = new JComboBox();\r
-  protected JCheckBox startupCheckbox = new JCheckBox();\r
-  protected JTextField startupFileTextfield = new JTextField();\r
-  public void ok_actionPerformed(ActionEvent e)\r
-  {\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void ok_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void cancel_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     *\r
+     * @param e DOCUMENT ME!\r
+     */\r
+    public void annotations_actionPerformed(ActionEvent e)\r
+    {\r
+    }\r
+\r
+\r
+    /**\r
+     * DOCUMENT ME!\r
+     */\r
+    public void startupFileTextfield_mouseClicked()\r
+    {\r
+    }\r
+\r
+\r
+  public void newLink_actionPerformed(ActionEvent e) {\r
 \r
   }\r
 \r
-  public void cancel_actionPerformed(ActionEvent e)\r
-  {\r
+  public void editLink_actionPerformed(ActionEvent e) {\r
 \r
   }\r
 \r
-  public void annotations_actionPerformed(ActionEvent e)\r
-  {\r
+  public void deleteLink_actionPerformed(ActionEvent e) {\r
 \r
   }\r
 \r
-  public void jCheckBox1_actionPerformed(ActionEvent e)\r
+  public void defaultBrowser_mouseClicked(MouseEvent e)\r
   {\r
 \r
   }\r
 \r
-\r
-  public void startupFileTextfield_mouseClicked()\r
+  public void linkURLList_keyTyped(KeyEvent e)\r
   {\r
 \r
   }\r
 \r
+  public void useProxy_actionPerformed()\r
+  {\r
+      proxyServerTB.setEnabled(useProxy.isSelected());\r
+      proxyPortTB.setEnabled(useProxy.isSelected());\r
+  }\r
 }\r