JAL-3070 pull up hostURL and postURL to UIinfo and getter for action ext
[jalview.git] / src / jalview / jbgui / GPreferences.java
index 633d2b8..6807382 100755 (executable)
@@ -95,11 +95,11 @@ public class GPreferences extends JPanel
 
   protected JCheckBox rightAlign = new JCheckBox();
 
-  protected JComboBox<String> fontSizeCB = new JComboBox<String>();
+  protected JComboBox<String> fontSizeCB = new JComboBox<>();
 
-  protected JComboBox<String> fontStyleCB = new JComboBox<String>();
+  protected JComboBox<String> fontStyleCB = new JComboBox<>();
 
-  protected JComboBox<String> fontNameCB = new JComboBox<String>();
+  protected JComboBox<String> fontNameCB = new JComboBox<>();
 
   protected JCheckBox showOccupancy = new JCheckBox();
 
@@ -111,15 +111,15 @@ public class GPreferences extends JPanel
 
   protected JCheckBox scaleProteinToCdna = new JCheckBox();
 
-  protected JComboBox<String> gapSymbolCB = new JComboBox<String>();
+  protected JComboBox<String> gapSymbolCB = new JComboBox<>();
 
   protected JCheckBox wrap = new JCheckBox();
 
-  protected JComboBox<String> sortby = new JComboBox<String>();
+  protected JComboBox<String> sortby = new JComboBox<>();
 
-  protected JComboBox<String> sortAnnBy = new JComboBox<String>();
+  protected JComboBox<String> sortAnnBy = new JComboBox<>();
 
-  protected JComboBox<String> sortAutocalc = new JComboBox<String>();
+  protected JComboBox<String> sortAutocalc = new JComboBox<>();
 
   protected JCheckBox startupCheckbox = new JCheckBox();
 
@@ -159,7 +159,7 @@ public class GPreferences extends JPanel
 
   protected JCheckBox addTempFactor = new JCheckBox();
 
-  protected JComboBox<String> structViewer = new JComboBox<String>();
+  protected JComboBox<String> structViewer = new JComboBox<>();
 
   protected JTextField chimeraPath = new JTextField();
 
@@ -176,9 +176,22 @@ public class GPreferences extends JPanel
 
   protected JPanel maxColour = new JPanel();
 
-  protected JComboBox<String> protColour = new JComboBox<String>();
+  protected JComboBox<String> protColour = new JComboBox<>();
 
-  protected JComboBox<String> nucColour = new JComboBox<String>();
+  protected JComboBox<String> nucColour = new JComboBox<>();
+
+  /*
+   * Overview tab components
+   */
+  protected JPanel gapColour = new JPanel();
+
+  protected JPanel hiddenColour = new JPanel();
+
+  protected JCheckBox useLegacyGap;
+
+  protected JCheckBox showHiddenAtStart;
+
+  protected JLabel gapLabel;
 
   /*
    * Connections tab components
@@ -216,7 +229,7 @@ public class GPreferences extends JPanel
   /*
    * Output tab components
    */
-  protected JComboBox<Object> epsRendering = new JComboBox<Object>();
+  protected JComboBox<Object> epsRendering = new JComboBox<>();
 
   protected JLabel userIdWidthlabel = new JLabel();
 
@@ -251,10 +264,6 @@ public class GPreferences extends JPanel
 
   protected JCheckBox sortByTree = new JCheckBox();
 
-  /*
-   * DAS Settings tab
-   */
-  protected JPanel dasTab = new JPanel();
 
   /*
    * Web Services tab
@@ -294,6 +303,9 @@ public class GPreferences extends JPanel
     tabbedPane.add(initColoursTab(),
             MessageManager.getString("label.colours"));
 
+    tabbedPane.add(initOverviewTab(),
+            MessageManager.getString("label.overview"));
+
     tabbedPane.add(initStructureTab(),
             MessageManager.getString("label.structure"));
 
@@ -310,12 +322,6 @@ public class GPreferences extends JPanel
             MessageManager.getString("label.editing"));
 
     /*
-     * See DasSourceBrowser for the real work of configuring this tab.
-     */
-    dasTab.setLayout(new BorderLayout());
-    tabbedPane.add(dasTab, MessageManager.getString("label.das_settings"));
-
-    /*
      * See WsPreferences for the real work of configuring this tab.
      */
     wsTab.setLayout(new BorderLayout());
@@ -508,7 +514,9 @@ public class GPreferences extends JPanel
             MessageManager.getString("label.default_browser_unix"));
     defaultBrowser.setFont(LABEL_FONT);
     defaultBrowser.setText("");
-
+    final String tooltip = JvSwingUtils.wrapTooltip(true,
+            MessageManager.getString("label.double_click_to_browse"));
+    defaultBrowser.setToolTipText(tooltip);
     defaultBrowser.addMouseListener(new MouseAdapter()
     {
       @Override
@@ -963,6 +971,151 @@ public class GPreferences extends JPanel
   }
 
   /**
+   * Initialises the Overview tabbed panel.
+   * 
+   * @return
+   */
+  private JPanel initOverviewTab()
+  {
+    JPanel overviewPanel = new JPanel();
+    overviewPanel.setBorder(new TitledBorder(
+            MessageManager.getString("label.overview_settings")));
+
+    gapColour.setFont(LABEL_FONT);
+    // fixing the border colours stops apparent colour bleed from the panel
+    gapColour.setBorder(
+            BorderFactory.createEtchedBorder(Color.white, Color.lightGray));
+    gapColour.setPreferredSize(new Dimension(40, 20));
+    gapColour.addMouseListener(new MouseAdapter()
+    {
+      @Override
+      public void mousePressed(MouseEvent e)
+      {
+        gapColour_actionPerformed(gapColour);
+      }
+    });
+
+    hiddenColour.setFont(LABEL_FONT);
+    // fixing the border colours stops apparent colour bleed from the panel
+    hiddenColour.setBorder(
+            BorderFactory.createEtchedBorder(Color.white, Color.lightGray));
+    hiddenColour.setPreferredSize(new Dimension(40, 20));
+    hiddenColour.addMouseListener(new MouseAdapter()
+    {
+      @Override
+      public void mousePressed(MouseEvent e)
+      {
+        hiddenColour_actionPerformed(hiddenColour);
+      }
+    });
+    
+    useLegacyGap = new JCheckBox(
+            MessageManager.getString("label.ov_legacy_gap"));
+    useLegacyGap.setFont(LABEL_FONT);
+    useLegacyGap.setHorizontalAlignment(SwingConstants.LEFT);
+    useLegacyGap.setVerticalTextPosition(SwingConstants.TOP);
+    gapLabel = new JLabel(
+            MessageManager.getString("label.gap_colour"));
+    gapLabel.setFont(LABEL_FONT);
+    gapLabel.setHorizontalAlignment(SwingConstants.LEFT);
+    gapLabel.setVerticalTextPosition(SwingConstants.TOP);
+    showHiddenAtStart = new JCheckBox(
+            MessageManager.getString("label.ov_show_hide_default"));
+    showHiddenAtStart.setFont(LABEL_FONT);
+    showHiddenAtStart.setHorizontalAlignment(SwingConstants.LEFT);
+    showHiddenAtStart.setVerticalTextPosition(SwingConstants.TOP);
+    JLabel hiddenLabel = new JLabel(
+            MessageManager.getString("label.hidden_colour"));
+    hiddenLabel.setFont(LABEL_FONT);
+    hiddenLabel.setHorizontalAlignment(SwingConstants.LEFT);
+    hiddenLabel.setVerticalTextPosition(SwingConstants.TOP);
+
+    useLegacyGap.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        useLegacyGaps_actionPerformed(e);
+      }
+    });
+
+    overviewPanel.setLayout(new GridBagLayout());
+    GridBagConstraints c1 = new GridBagConstraints();
+
+    c1.fill = GridBagConstraints.HORIZONTAL;
+    c1.gridx = 0;
+    c1.gridy = 0;
+    c1.weightx = 1;
+    c1.ipady = 20;
+    c1.anchor = GridBagConstraints.FIRST_LINE_START;
+    overviewPanel.add(useLegacyGap, c1);
+
+    GridBagConstraints c2 = new GridBagConstraints();
+    c2.fill = GridBagConstraints.HORIZONTAL;
+    c2.gridx = 1;
+    c2.gridy = 0;
+    c2.insets = new Insets(0, 15, 0, 10);
+    overviewPanel.add(gapLabel, c2);
+
+    GridBagConstraints c3 = new GridBagConstraints();
+    c3.fill = GridBagConstraints.HORIZONTAL;
+    c3.gridx = 2;
+    c3.gridy = 0;
+    c3.insets = new Insets(0, 0, 0, 15);
+    overviewPanel.add(gapColour, c3);
+
+    GridBagConstraints c4 = new GridBagConstraints();
+    c4.fill = GridBagConstraints.HORIZONTAL;
+    c4.gridx = 0;
+    c4.gridy = 1;
+    c4.weightx = 1;
+    overviewPanel.add(showHiddenAtStart, c4);
+
+    GridBagConstraints c5 = new GridBagConstraints();
+    c5.fill = GridBagConstraints.HORIZONTAL;
+    c5.gridx = 1;
+    c5.gridy = 1;
+    c5.insets = new Insets(0, 15, 0, 10);
+    overviewPanel.add(hiddenLabel, c5);
+
+    GridBagConstraints c6 = new GridBagConstraints();
+    c6.fill = GridBagConstraints.HORIZONTAL;
+    c6.gridx = 2;
+    c6.gridy = 1;
+    c6.insets = new Insets(0, 0, 0, 15);
+    overviewPanel.add(hiddenColour, c6);
+
+    JButton resetButton = new JButton(
+            MessageManager.getString("label.reset_to_defaults"));
+
+    resetButton.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        resetOvDefaults_actionPerformed(e);
+      }
+    });
+
+    GridBagConstraints c7 = new GridBagConstraints();
+    c7.fill = GridBagConstraints.NONE;
+    c7.gridx = 0;
+    c7.gridy = 2;
+    c7.insets = new Insets(10, 0, 0, 0);
+    c7.anchor = GridBagConstraints.WEST;
+    overviewPanel.add(resetButton, c7);
+
+    // Add padding so the panel doesn't look ridiculous
+    JPanel spacePanel = new JPanel();
+    overviewPanel.add(spacePanel,
+            new GridBagConstraints(0, 3, 1, 1, 1.0, 1.0,
+                    GridBagConstraints.WEST, GridBagConstraints.BOTH,
+                    new Insets(0, 0, 0, 5), 0, 0));
+
+    return overviewPanel;
+  }
+
+  /**
    * Initialises the Structure tabbed panel.
    * 
    * @return
@@ -1045,14 +1198,14 @@ public class GPreferences extends JPanel
     pathLabel.setFont(new java.awt.Font("SansSerif", 0, 11));
     pathLabel.setHorizontalAlignment(SwingConstants.LEFT);
     pathLabel.setText(MessageManager.getString("label.chimera_path"));
-    final String tooltip = JvSwingUtils.wrapTooltip(true,
-            MessageManager.getString("label.chimera_path_tip"));
-    pathLabel.setToolTipText(tooltip);
     pathLabel.setBounds(new Rectangle(10, ypos, 140, height));
     structureTab.add(pathLabel);
 
     chimeraPath.setFont(LABEL_FONT);
     chimeraPath.setText("");
+    final String tooltip = JvSwingUtils.wrapTooltip(true,
+            MessageManager.getString("label.chimera_path_tip"));
+    chimeraPath.setToolTipText(tooltip);
     chimeraPath.setBounds(new Rectangle(160, ypos, 300, height));
     chimeraPath.addMouseListener(new MouseAdapter()
     {
@@ -1351,6 +1504,9 @@ public class GPreferences extends JPanel
     startupCheckbox.setSelected(true);
     startupFileTextfield.setFont(LABEL_FONT);
     startupFileTextfield.setBounds(new Rectangle(172, 310, 330, 20));
+    final String tooltip = JvSwingUtils.wrapTooltip(true,
+            MessageManager.getString("label.double_click_to_browse"));
+    startupFileTextfield.setToolTipText(tooltip);
     startupFileTextfield.addMouseListener(new MouseAdapter()
     {
       @Override
@@ -1494,12 +1650,28 @@ public class GPreferences extends JPanel
   {
   }
 
+  protected void gapColour_actionPerformed(JPanel panel)
+  {
+  }
+
+  protected void hiddenColour_actionPerformed(JPanel panel)
+  {
+  }
+
   protected void showunconserved_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub
 
   }
 
+  protected void useLegacyGaps_actionPerformed(ActionEvent e)
+  {
+  }
+
+  protected void resetOvDefaults_actionPerformed(ActionEvent e)
+  {
+  }
+
   /**
    * DOCUMENT ME!
    *