/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import javax.swing.border.*;
import javax.swing.event.*;
JPanel jPanel3 = new JPanel();
+ JPanel autoAnnotSettings1 = new JPanel();
+
+ JPanel autoAnnotSettings2 = new JPanel();
+
JPanel exportTab = new JPanel();
JLabel epsLabel = new JLabel();
protected JCheckBox rightAlign = new JCheckBox();
+ protected JCheckBox showUnconserved = new JCheckBox();
+
protected JCheckBox idItalics = new JCheckBox();
protected JCheckBox openoverv = new JCheckBox();
+ protected JCheckBox usagestats = new JCheckBox();
+ protected JCheckBox questionnaire = new JCheckBox();
+ protected JCheckBox versioncheck = new JCheckBox();
+ protected JLabel showGroupbits = new JLabel();
+ protected JLabel showConsensbits = new JLabel();
+ protected JCheckBox showConsensProfile = new JCheckBox();
+ protected JCheckBox showConsensHistogram = new JCheckBox();
+ protected JCheckBox showGroupConsensus = new JCheckBox();
+ protected JCheckBox showGroupConservation = new JCheckBox();
/**
* Creates a new GPreferences object.
identity.setHorizontalTextPosition(SwingConstants.LEFT);
identity.setSelected(true);
identity.setText("Consensus");
+ showGroupbits.setFont(verdana11);
+ showGroupbits.setHorizontalAlignment(SwingConstants.RIGHT);
+ showGroupbits.setHorizontalTextPosition(SwingConstants.LEFT);
+ showGroupbits.setText("Group:");
+ showConsensbits.setFont(verdana11);
+ showConsensbits.setHorizontalAlignment(SwingConstants.RIGHT);
+ showConsensbits.setHorizontalTextPosition(SwingConstants.LEFT);
+ showConsensbits.setText("Consensus:");
+ showConsensHistogram.setEnabled(false);
+ showConsensHistogram.setFont(verdana11);
+ showConsensHistogram.setHorizontalAlignment(SwingConstants.RIGHT);
+ showConsensHistogram.setHorizontalTextPosition(SwingConstants.LEFT);
+ showConsensHistogram.setSelected(true);
+ showConsensHistogram.setText("Histogram");
+ showConsensProfile.setEnabled(false);
+ showConsensProfile.setFont(verdana11);
+ showConsensProfile.setHorizontalAlignment(SwingConstants.RIGHT);
+ showConsensProfile.setHorizontalTextPosition(SwingConstants.LEFT);
+ showConsensProfile.setSelected(true);
+ showConsensProfile.setText("Profile");
+ showGroupConsensus.setEnabled(false);
+ showGroupConsensus.setFont(verdana11);
+ showGroupConsensus.setHorizontalAlignment(SwingConstants.RIGHT);
+ showGroupConsensus.setHorizontalTextPosition(SwingConstants.LEFT);
+ showGroupConsensus.setSelected(true);
+ showGroupConsensus.setText("Consensus");
+ showGroupConservation.setEnabled(false);
+ showGroupConservation.setFont(verdana11);
+ showGroupConservation.setHorizontalAlignment(SwingConstants.RIGHT);
+ showGroupConservation.setHorizontalTextPosition(SwingConstants.LEFT);
+ showGroupConservation.setSelected(true);
+ showGroupConservation.setText("Conservation");
annotations.setFont(verdana11);
annotations.setHorizontalAlignment(SwingConstants.RIGHT);
annotations.setHorizontalTextPosition(SwingConstants.LEFT);
annotations_actionPerformed(e);
}
});
+ showUnconserved.setFont(verdana11);
+ showUnconserved.setHorizontalAlignment(SwingConstants.RIGHT);
+ showUnconserved.setHorizontalTextPosition(SwingConstants.LEFT);
+ //showUnconserved.setBounds(new Rectangle(169, 40, 200, 23));
+ showUnconserved.setSelected(true);
+ showUnconserved.setText("Show Unconserved");
+ showUnconserved.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ showunconserved_actionPerformed(e);
+ }
+ });
+
gapLabel.setFont(verdana11);
gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);
gapLabel.setText("Gap Symbol ");
fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);
fontLabel.setText("Font ");
fontSizeCB.setFont(verdana11);
- fontSizeCB.setBounds(new Rectangle(319, 111, 49, 21));
+ fontSizeCB.setBounds(new Rectangle(319, 101, 49, 21));
fontStyleCB.setFont(verdana11);
- fontStyleCB.setBounds(new Rectangle(367, 111, 70, 21));
+ fontStyleCB.setBounds(new Rectangle(367, 101, 70, 21));
fontNameCB.setFont(verdana11);
- fontNameCB.setBounds(new Rectangle(172, 111, 147, 21));
+ fontNameCB.setBounds(new Rectangle(172, 101, 147, 21));
gapSymbolCB.setFont(verdana11);
gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21));
startupCheckbox.setText("Open file");
browserLabel.setText("Default Browser (Unix)");
defaultBrowser.setFont(verdana11);
defaultBrowser.setText("");
+ usagestats.setText("Send usage statistics");
+ usagestats.setFont(verdana11);
+ usagestats.setHorizontalAlignment(SwingConstants.RIGHT);
+ usagestats.setHorizontalTextPosition(SwingConstants.LEADING);
+ questionnaire.setText("Check for questionnaires");
+ questionnaire.setFont(verdana11);
+ questionnaire.setHorizontalAlignment(SwingConstants.RIGHT);
+ questionnaire.setHorizontalTextPosition(SwingConstants.LEADING);
+ versioncheck.setText("Check for latest version");
+ versioncheck.setFont(verdana11);
+ versioncheck.setHorizontalAlignment(SwingConstants.RIGHT);
+ versioncheck.setHorizontalTextPosition(SwingConstants.LEADING);
newLink.setText("New");
newLink.addActionListener(new java.awt.event.ActionListener()
{
sortLabel.setText("Sort by ");
jPanel2.setBounds(new Rectangle(7, 17, 158, 278));
jPanel2.setLayout(gridLayout2);
- gridLayout2.setRows(12);
+ gridLayout2.setRows(13);
jPanel3.setBounds(new Rectangle(173, 35, 274, 26));
+ autoAnnotSettings1.setBounds(new Rectangle(173,53,274,26));// new Rectangle(173, 116, 274, 78));
+ autoAnnotSettings2.setBounds(new Rectangle(173,72,274,26));
exportTab.setLayout(null);
epsLabel.setFont(verdana11);
epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);
jPanel2.add(seqLimit);
jPanel2.add(rightAlign);
jPanel2.add(fontLabel);
+ jPanel2.add(showUnconserved);
jPanel2.add(idItalics);
jPanel2.add(smoothFont);
jPanel2.add(wrap);
visualTab.add(fontNameCB);
visualTab.add(fontSizeCB);
visualTab.add(fontStyleCB);
+ visualTab.add(autoAnnotSettings1);
+ visualTab.add(autoAnnotSettings2);
jPanel3.add(conservation);
jPanel3.add(identity);
jPanel3.add(quality);
+ autoAnnotSettings1.setLayout(new FlowLayout());
+ autoAnnotSettings2.setLayout(new FlowLayout());
+ autoAnnotSettings1.add(showConsensbits);
+ autoAnnotSettings1.add(showConsensHistogram);
+ autoAnnotSettings1.add(showConsensProfile);
+ autoAnnotSettings2.add(showGroupbits);
+ autoAnnotSettings2.add(showGroupConsensus);
+ autoAnnotSettings2.add(showGroupConservation);
visualTab.add(jPanel2);
+
linkPanel.add(editLinkButtons, BorderLayout.EAST);
editLinkButtons.add(newLink, null);
editLinkButtons.add(editLink, null);
connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0,
0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
new Insets(15, 0, 0, 15), 307, 1));
-
+ connectTab.add(usagestats, new GridBagConstraints(0, 4, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+ connectTab.add(questionnaire, new GridBagConstraints(1, 4, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+ connectTab.add(versioncheck, new GridBagConstraints(0, 5, 1, 1, 1.0,
+ 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
+ new Insets(0, 2, 4,2), 70, 1));
+
jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0,
GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
2, 5, 185), 2, -4));
exportTab.add(jPanel11);
}
+ protected void showunconserved_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
/**
* DOCUMENT ME!
*
git://source.jalview.org / jalview.git / blobdiff