JAL-1479 improved Sifts PID calculation for determining an Entity to process

[jalview.git] / src / jalview / jbgui / GStructureChooser.java

diff --git a/src/jalview/jbgui/GStructureChooser.java b/src/jalview/jbgui/GStructureChooser.java
index 8430557..44f659d 100644 (file)
--- a/src/jalview/jbgui/GStructureChooser.java
+++ b/src/jalview/jbgui/GStructureChooser.java
@@ -22,13 +22,14 @@
 package jalview.jbgui;
 
 import jalview.datamodel.SequenceI;
+import jalview.fts.api.FTSDataColumnI;
+import jalview.fts.core.FTSDataColumnPreferences;
+import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource;
+import jalview.fts.service.pdb.PDBFTSRestClient;
 import jalview.gui.AlignmentPanel;
 import jalview.gui.Desktop;
 import jalview.gui.JvSwingUtils;
-import jalview.jbgui.PDBDocFieldPreferences.PreferenceSource;
 import jalview.util.MessageManager;
-import jalview.ws.dbsources.PDBRestClient;
-import jalview.ws.dbsources.PDBRestClient.PDBDocField;
 
 import java.awt.BorderLayout;
 import java.awt.CardLayout;
@@ -60,6 +61,7 @@ import javax.swing.event.ChangeEvent;
 import javax.swing.event.ChangeListener;
 import javax.swing.event.DocumentEvent;
 import javax.swing.event.DocumentListener;
+import javax.swing.table.TableColumn;
 
 @SuppressWarnings("serial")
 /**
@@ -157,8 +159,65 @@ public abstract class GStructureChooser extends JPanel implements
 
   protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB";
 
-  protected JTable tbl_summary = new JTable()
+  protected JTable tbl_local_pdb = new JTable();
+
+  protected JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb);
+
+  private JTabbedPane pnl_filter = new JTabbedPane();
+
+  protected FTSDataColumnPreferences pdbDocFieldPrefs = new FTSDataColumnPreferences(
+          PreferenceSource.STRUCTURE_CHOOSER,
+          PDBFTSRestClient.getInstance());
+
+  protected FTSDataColumnI[] previousWantedFields;
+
+  private JTable tbl_summary = new JTable()
   {
+    private boolean inLayout;
+
+    @Override
+    public boolean getScrollableTracksViewportWidth()
+    {
+      return hasExcessWidth();
+
+    }
+
+    @Override
+    public void doLayout()
+    {
+      if (hasExcessWidth())
+      {
+        autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS;
+      }
+      inLayout = true;
+      super.doLayout();
+      inLayout = false;
+      autoResizeMode = AUTO_RESIZE_OFF;
+    }
+
+    protected boolean hasExcessWidth()
+    {
+      return getPreferredSize().width < getParent().getWidth();
+    }
+
+    @Override
+    public void columnMarginChanged(ChangeEvent e)
+    {
+      if (isEditing())
+      {
+        removeEditor();
+      }
+      TableColumn resizingColumn = getTableHeader().getResizingColumn();
+      // Need to do this here, before the parent's
+      // layout manager calls getPreferredSize().
+      if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF
+              && !inLayout)
+      {
+        resizingColumn.setPreferredWidth(resizingColumn.getWidth());
+      }
+      resizeAndRepaint();
+    }
+
     @Override
     public String getToolTipText(MouseEvent evt)
     {
@@ -189,17 +248,6 @@ public abstract class GStructureChooser extends JPanel implements
 
   protected JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
 
-  protected JTable tbl_local_pdb = new JTable();
-
-  protected JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb);
-
-  private JTabbedPane pnl_filter = new JTabbedPane();
-
-  private PDBDocFieldPreferences pdbDocFieldPrefs = new PDBDocFieldPreferences(
-          PreferenceSource.STRUCTURE_CHOOSER);
-
-  protected PDBDocField[] previousWantedFields;
-
   public GStructureChooser()
   {
     try
@@ -392,11 +440,9 @@ public abstract class GStructureChooser extends JPanel implements
       }
     });
 
-    scrl_foundStructures.setPreferredSize(new Dimension(500, 300));
-    scrl_foundStructures
-            .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
+    scrl_foundStructures.setPreferredSize(new Dimension(800, 400));
 
-    scrl_localPDB.setPreferredSize(new Dimension(500, 300));
+    scrl_localPDB.setPreferredSize(new Dimension(800, 400));
     scrl_localPDB
             .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
 
@@ -404,9 +450,8 @@ public abstract class GStructureChooser extends JPanel implements
     chk_invertFilter.setFont(new java.awt.Font("Verdana", 0, 12));
     chk_rememberSettings.setFont(new java.awt.Font("Verdana", 0, 12));
     chk_rememberSettings.setVisible(false);
-
-    txt_search.setToolTipText(MessageManager
-            .getString("label.enter_pdb_id"));
+    txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true,
+            MessageManager.getString("label.enter_pdb_id")));
     cmb_filterOption.setToolTipText(MessageManager
             .getString("info.select_filter_option"));
     txt_search.getDocument().addDocumentListener(new DocumentListener()
@@ -473,9 +518,9 @@ public abstract class GStructureChooser extends JPanel implements
           btn_cancel.setEnabled(false);
           btn_view.setVisible(false);
           btn_cancel.setVisible(false);
-          previousWantedFields = PDBDocFieldPreferences
+          previousWantedFields = pdbDocFieldPrefs
                   .getStructureSummaryFields().toArray(
-                          new PDBRestClient.PDBDocField[0]);
+                          new FTSDataColumnI[0]);
         }
         if (sourceTabbedPane.getTitleAt(index)
                 .equals(foundStructureSummary))
@@ -493,7 +538,7 @@ public abstract class GStructureChooser extends JPanel implements
       }
     };
     pnl_filter.addChangeListener(changeListener);
-    pnl_filter.setPreferredSize(new Dimension(500, 300));
+    pnl_filter.setPreferredSize(new Dimension(800, 400));
     pnl_filter.add(foundStructureSummary, scrl_foundStructures);
     pnl_filter.add(configureCols, pdbDocFieldPrefs);
 
@@ -517,7 +562,7 @@ public abstract class GStructureChooser extends JPanel implements
     mainFrame.setVisible(true);
     mainFrame.setContentPane(this);
     mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
-    Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400);
+    Desktop.addInternalFrame(mainFrame, frameTitle, 900, 500);
   }
 
   public boolean wantedFieldsUpdated()
@@ -526,10 +571,12 @@ public abstract class GStructureChooser extends JPanel implements
     {
       return true;
     }
-
-    return Arrays.equals(PDBDocFieldPreferences.getStructureSummaryFields()
-            .toArray(new PDBRestClient.PDBDocField[0]),
-            previousWantedFields) ? false : true;
+    
+    FTSDataColumnI[] currentWantedFields = pdbDocFieldPrefs
+            .getStructureSummaryFields()
+            .toArray(new FTSDataColumnI[0]);
+    return Arrays.equals(currentWantedFields, previousWantedFields) ? false
+            : true;
 
   }
 
@@ -703,6 +750,10 @@ public abstract class GStructureChooser extends JPanel implements
     }
   }
 
+  public JTable getResultTable()
+  {
+    return tbl_summary;
+  }
   public JComboBox<FilterOption> getCmbFilterOption()
   {
     return cmb_filterOption;