/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.jbgui;
-import javax.swing.*;
-import java.awt.event.ActionListener;
+import java.awt.BorderLayout;
+import java.awt.GridLayout;
import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
-public class GStructureViewer extends JInternalFrame
+import javax.swing.JInternalFrame;
+import javax.swing.JLabel;
+import javax.swing.JMenu;
+import javax.swing.JMenuBar;
+import javax.swing.JMenuItem;
+import javax.swing.JPanel;
+import javax.swing.JRadioButtonMenuItem;
+
+import jalview.api.structures.JalviewStructureDisplayI;
+import jalview.gui.ColourMenuHelper.ColourChangeListener;
+import jalview.util.ImageMaker.TYPE;
+import jalview.util.MessageManager;
+
+@SuppressWarnings("serial")
+public abstract class GStructureViewer extends JInternalFrame
+ implements JalviewStructureDisplayI, ColourChangeListener
{
+ // private AAStructureBindingModel bindingModel;
+
+ protected JMenu savemenu;
+
+ protected JMenu viewMenu;
+
+ protected JMenu colourMenu;
+
+ protected JMenu chainMenu;
+
+ protected JMenu viewerActionMenu;
+
+ protected JMenuItem alignStructs;
+
+ protected JMenuItem fitToWindow;
+
+ protected JRadioButtonMenuItem seqColour;
+
+ protected JRadioButtonMenuItem chainColour;
+
+ protected JRadioButtonMenuItem chargeColour;
+
+ protected JRadioButtonMenuItem viewerColour;
+
+ protected JMenuItem helpItem;
+
+ protected JLabel statusBar;
+
+ protected JPanel statusPanel;
+
+ /**
+ * Constructor
+ */
public GStructureViewer()
{
try
private void jbInit() throws Exception
{
+
+ setName("jalview-structureviewer");
+
+ JMenuBar menuBar = new JMenuBar();
this.setJMenuBar(menuBar);
- fileMenu.setText("File");
- savemenu.setActionCommand("Save Image");
- savemenu.setText("Save As");
- pdbFile.setText("PDB File");
+
+ JMenu fileMenu = new JMenu();
+ fileMenu.setText(MessageManager.getString("action.file"));
+
+ savemenu = new JMenu();
+ savemenu.setActionCommand(
+ MessageManager.getString("action.save_image"));
+ savemenu.setText(MessageManager.getString("action.save_as"));
+
+ JMenuItem pdbFile = new JMenuItem();
+ pdbFile.setText(MessageManager.getString("label.pdb_file"));
pdbFile.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- pdbFile_actionPerformed(actionEvent);
+ pdbFile_actionPerformed();
}
});
+
+ JMenuItem png = new JMenuItem();
png.setText("PNG");
png.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- png_actionPerformed(actionEvent);
+ makePDBImage(TYPE.PNG);
}
});
+
+ JMenuItem eps = new JMenuItem();
eps.setText("EPS");
eps.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- eps_actionPerformed(actionEvent);
+ makePDBImage(TYPE.EPS);
}
});
- viewMapping.setText("View Mapping");
+
+ JMenuItem viewMapping = new JMenuItem();
+ viewMapping.setText(MessageManager.getString("label.view_mapping"));
viewMapping.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- viewMapping_actionPerformed(actionEvent);
- }
- });
- viewMenu.setText("View");
- chainMenu.setText("Show Chain");
- colourMenu.setText("Colours");
- backGround.setText("Background Colour...");
- backGround.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- backGround_actionPerformed(actionEvent);
- }
- });
- seqColour.setSelected(false);
- seqColour.setText("By Sequence");
- seqColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- seqColour_actionPerformed(actionEvent);
- }
- });
- chainColour.setText("By Chain");
- chainColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- chainColour_actionPerformed(actionEvent);
- }
- });
- chargeColour.setText("Charge & Cysteine");
- chargeColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- chargeColour_actionPerformed(actionEvent);
- }
- });
- zappoColour.setText("Zappo");
- zappoColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- zappoColour_actionPerformed(actionEvent);
- }
- });
- taylorColour.setText("Taylor");
- taylorColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- taylorColour_actionPerformed(actionEvent);
- }
- });
- hydroColour.setText("Hydro");
- hydroColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- hydroColour_actionPerformed(actionEvent);
- }
- });
- strandColour.setText("Strand");
- strandColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- strandColour_actionPerformed(actionEvent);
- }
- });
- helixColour.setText("Helix Propensity");
- helixColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- helixColour_actionPerformed(actionEvent);
- }
- });
- turnColour.setText("Turn Propensity");
- turnColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- turnColour_actionPerformed(actionEvent);
+ viewMapping_actionPerformed();
}
});
- buriedColour.setText("Buried Index");
- buriedColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- buriedColour_actionPerformed(actionEvent);
- }
- });
- userColour.setText("User Defined ...");
- userColour.addActionListener(new ActionListener()
+
+ viewMenu = new JMenu();
+ viewMenu.setText(MessageManager.getString("action.view"));
+
+ chainMenu = new JMenu();
+ chainMenu.setText(MessageManager.getString("action.show_chain"));
+
+ fitToWindow = new JMenuItem();
+ fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
+ fitToWindow.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- userColour_actionPerformed(actionEvent);
+ fitToWindow_actionPerformed();
}
});
- jmolColour.setSelected(false);
- jmolColour.setText("Colour with Jmol");
- jmolColour.setToolTipText("Let Jmol manage structure colours.");
- jmolColour.addActionListener(new ActionListener()
- {
- public void actionPerformed(ActionEvent actionEvent)
- {
- jmolColour_actionPerformed(actionEvent);
- }
- }
- );
- helpMenu.setText("Help");
- jmolHelp.setText("Jmol Help");
- jmolHelp.addActionListener(new ActionListener()
+
+ JMenu helpMenu = new JMenu();
+ helpMenu.setText(MessageManager.getString("action.help"));
+ helpItem = new JMenuItem();
+ helpItem.setText(MessageManager.getString("label.jmol_help"));
+ helpItem.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- jmolHelp_actionPerformed(actionEvent);
+ showHelp_actionPerformed();
}
});
- alignStructs.setText("Align structures");
+ alignStructs = new JMenuItem();
+ alignStructs.setText(
+ MessageManager.getString("label.superpose_structures"));
alignStructs.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent actionEvent)
{
- alignStructs_actionPerformed(actionEvent);
+ alignStructsWithAllAlignPanels();
}
});
- jmolActionMenu.setText("Jmol");
- menuBar.add(fileMenu);
- menuBar.add(viewMenu);
- menuBar.add(colourMenu);
- menuBar.add(jmolActionMenu);
- jmolActionMenu.setVisible(false);
- menuBar.add(helpMenu);
+
+ viewerActionMenu = new JMenu(); // text set in sub-classes
+ viewerActionMenu.setVisible(false);
+ viewerActionMenu.add(alignStructs);
+ colourMenu = new JMenu();
+ colourMenu.setText(MessageManager.getString("label.colours"));
fileMenu.add(savemenu);
fileMenu.add(viewMapping);
savemenu.add(pdbFile);
savemenu.add(png);
savemenu.add(eps);
viewMenu.add(chainMenu);
+ helpMenu.add(helpItem);
- colourMenu.add(seqColour);
- colourMenu.add(chainColour);
- colourMenu.add(chargeColour);
- colourMenu.add(zappoColour);
- colourMenu.add(taylorColour);
- colourMenu.add(hydroColour);
- colourMenu.add(helixColour);
- colourMenu.add(strandColour);
- colourMenu.add(turnColour);
- colourMenu.add(buriedColour);
- colourMenu.add(userColour);
- colourMenu.add(jmolColour);
- colourMenu.add(backGround);
-
- colourButtons.add(seqColour);
- colourButtons.add(chainColour);
- colourButtons.add(chargeColour);
- colourButtons.add(zappoColour);
- colourButtons.add(taylorColour);
- colourButtons.add(hydroColour);
- colourButtons.add(helixColour);
- colourButtons.add(strandColour);
- colourButtons.add(turnColour);
- colourButtons.add(buriedColour);
- colourButtons.add(userColour);
- colourButtons.add(jmolColour);
-
- helpMenu.add(jmolHelp);
- jmolActionMenu.add(alignStructs);
- }
-
- protected void jmolColour_actionPerformed(ActionEvent actionEvent)
- {
- }
-
- protected void alignStructs_actionPerformed(ActionEvent actionEvent)
- {
- }
-
- JMenuBar menuBar = new JMenuBar();
-
- JMenu fileMenu = new JMenu();
-
- JMenu savemenu = new JMenu();
-
- JMenuItem pdbFile = new JMenuItem();
-
- JMenuItem png = new JMenuItem();
-
- JMenuItem eps = new JMenuItem();
-
- JMenuItem viewMapping = new JMenuItem();
-
- protected JMenu viewMenu = new JMenu();
-
- protected JMenu chainMenu = new JMenu();
-
- JMenu jMenu1 = new JMenu();
-
- protected JMenu colourMenu = new JMenu();
-
- protected JMenu jmolActionMenu = new JMenu();
-
- protected JMenuItem alignStructs = new JMenuItem();
-
- JMenuItem backGround = new JMenuItem();
-
- protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
-
- protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
-
- protected ButtonGroup colourButtons = new ButtonGroup();
-
- JMenu helpMenu = new JMenu();
-
- JMenuItem jmolHelp = new JMenuItem();
-
- public void pdbFile_actionPerformed(ActionEvent actionEvent)
- {
-
- }
-
- public void png_actionPerformed(ActionEvent actionEvent)
- {
-
- }
-
- public void eps_actionPerformed(ActionEvent actionEvent)
- {
-
- }
-
- public void viewMapping_actionPerformed(ActionEvent actionEvent)
- {
-
- }
-
- public void seqColour_actionPerformed(ActionEvent actionEvent)
- {
+ menuBar.add(fileMenu);
+ menuBar.add(viewMenu);
+ menuBar.add(colourMenu);
+ menuBar.add(viewerActionMenu);
+ menuBar.add(helpMenu);
+ statusPanel = new JPanel();
+ statusPanel.setLayout(new GridLayout());
+ this.getContentPane().add(statusPanel, BorderLayout.SOUTH);
+ statusBar = new JLabel();
+ statusPanel.add(statusBar, null);
}
- public void chainColour_actionPerformed(ActionEvent actionEvent)
+ protected void fitToWindow_actionPerformed()
{
-
}
- public void chargeColour_actionPerformed(ActionEvent actionEvent)
+ protected void highlightSelection_actionPerformed()
{
-
}
- public void zappoColour_actionPerformed(ActionEvent actionEvent)
+ protected void viewerColour_actionPerformed()
{
-
}
- public void taylorColour_actionPerformed(ActionEvent actionEvent)
- {
-
- }
+ protected abstract String alignStructsWithAllAlignPanels();
- public void hydroColour_actionPerformed(ActionEvent actionEvent)
+ public void pdbFile_actionPerformed()
{
}
- public void helixColour_actionPerformed(ActionEvent actionEvent)
+ public void makePDBImage(TYPE imageType)
{
}
- public void strandColour_actionPerformed(ActionEvent actionEvent)
+ public void viewMapping_actionPerformed()
{
}
- public void turnColour_actionPerformed(ActionEvent actionEvent)
+ public void seqColour_actionPerformed()
{
}
- public void buriedColour_actionPerformed(ActionEvent actionEvent)
+ public void chainColour_actionPerformed()
{
}
- public void userColour_actionPerformed(ActionEvent actionEvent)
+ public void chargeColour_actionPerformed()
{
}
- public void backGround_actionPerformed(ActionEvent actionEvent)
+ public void background_actionPerformed()
{
}
- public void jmolHelp_actionPerformed(ActionEvent actionEvent)
+ public void showHelp_actionPerformed()
{
}
git://source.jalview.org / jalview.git / blobdiff