/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
backGround_actionPerformed(actionEvent);
}
});
- seqColour.setSelected(true);
+ seqColour.setSelected(false);
seqColour.setText("By Sequence");
seqColour.addActionListener(new ActionListener()
{
buriedColour_actionPerformed(actionEvent);
}
});
+ purinePyrimidineColour.setText("Purine/Pyrimidine");
+ purinePyrimidineColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ purinePyrimidineColour_actionPerformed(actionEvent);
+ }
+ });
+
userColour.setText("User Defined ...");
userColour.addActionListener(new ActionListener()
{
userColour_actionPerformed(actionEvent);
}
});
+ jmolColour.setSelected(false);
+ jmolColour.setText("Colour with Jmol");
+ jmolColour.setToolTipText("Let Jmol manage structure colours.");
+ jmolColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ jmolColour_actionPerformed(actionEvent);
+ }
+ });
helpMenu.setText("Help");
jmolHelp.setText("Jmol Help");
jmolHelp.addActionListener(new ActionListener()
jmolHelp_actionPerformed(actionEvent);
}
});
+ alignStructs.setText("Align structures");
+ alignStructs.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ alignStructs_actionPerformed(actionEvent);
+ }
+ });
+ jmolActionMenu.setText("Jmol");
menuBar.add(fileMenu);
menuBar.add(viewMenu);
menuBar.add(colourMenu);
+ menuBar.add(jmolActionMenu);
+ jmolActionMenu.setVisible(false);
menuBar.add(helpMenu);
fileMenu.add(savemenu);
fileMenu.add(viewMapping);
colourMenu.add(strandColour);
colourMenu.add(turnColour);
colourMenu.add(buriedColour);
+ colourMenu.add(purinePyrimidineColour);
colourMenu.add(userColour);
+ colourMenu.add(jmolColour);
colourMenu.add(backGround);
colourButtons.add(seqColour);
colourButtons.add(turnColour);
colourButtons.add(buriedColour);
colourButtons.add(userColour);
-
+ colourButtons.add(jmolColour);
+
helpMenu.add(jmolHelp);
+ jmolActionMenu.add(alignStructs);
+ }
+
+ protected void jmolColour_actionPerformed(ActionEvent actionEvent)
+ {
+ }
+
+ protected void alignStructs_actionPerformed(ActionEvent actionEvent)
+ {
}
JMenuBar menuBar = new JMenuBar();
JMenuItem viewMapping = new JMenuItem();
- JMenu viewMenu = new JMenu();
+ protected JMenu viewMenu = new JMenu();
protected JMenu chainMenu = new JMenu();
JMenu jMenu1 = new JMenu();
- JMenu colourMenu = new JMenu();
+ protected JMenu colourMenu = new JMenu();
+
+ protected JMenu jmolActionMenu = new JMenu();
+
+ protected JMenuItem alignStructs = new JMenuItem();
JMenuItem backGround = new JMenuItem();
protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
+ protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
+
protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
+ protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
+
protected ButtonGroup colourButtons = new ButtonGroup();
JMenu helpMenu = new JMenu();
}
+ public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
public void userColour_actionPerformed(ActionEvent actionEvent)
{