-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
- */\r
-\r
-package jalview.jbgui;\r
-\r
-import javax.swing.*;\r
-import java.awt.event.ActionListener;\r
-import java.awt.event.ActionEvent;\r
-\r
-public class GStructureViewer extends JInternalFrame\r
-{\r
- public GStructureViewer()\r
- {\r
- try\r
- {\r
- jbInit();\r
- }\r
- catch (Exception ex)\r
- {\r
- ex.printStackTrace();\r
- }\r
- }\r
-\r
- private void jbInit()\r
- throws Exception\r
- {\r
- this.setJMenuBar(menuBar);\r
- fileMenu.setText("File");\r
- savemenu.setActionCommand("Save Image");\r
- savemenu.setText("Save As");\r
- pdbFile.setText("PDB File");\r
- pdbFile.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent actionEvent)\r
- {\r
- pdbFile_actionPerformed(actionEvent);\r
- }\r
- });\r
- png.setText("PNG");\r
- png.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent actionEvent)\r
- {\r
- png_actionPerformed(actionEvent);\r
- }\r
- });\r
- eps.setText("EPS");\r
- eps.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent actionEvent)\r
- {\r
- eps_actionPerformed(actionEvent);\r
- }\r
- });\r
- viewMapping.setText("View Mapping");\r
- viewMapping.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent actionEvent)\r
- {\r
- viewMapping_actionPerformed(actionEvent);\r
- }\r
- });\r
- viewMenu.setText("View");\r
- chainMenu.setText("Show Chain");\r
- menuBar.add(fileMenu);\r
- menuBar.add(viewMenu);\r
- fileMenu.add(savemenu);\r
- fileMenu.add(viewMapping);\r
- savemenu.add(pdbFile);\r
- savemenu.add(png);\r
- savemenu.add(eps);\r
- viewMenu.add(chainMenu);\r
- }\r
-\r
- JMenuBar menuBar = new JMenuBar();\r
- JMenu fileMenu = new JMenu();\r
- JMenu savemenu = new JMenu();\r
- JMenuItem pdbFile = new JMenuItem();\r
- JMenuItem png = new JMenuItem();\r
- JMenuItem eps = new JMenuItem();\r
- JMenuItem viewMapping = new JMenuItem();\r
- JMenu viewMenu = new JMenu();\r
- protected JMenu chainMenu = new JMenu();\r
- JMenu jMenu1 = new JMenu();\r
- public void pdbFile_actionPerformed(ActionEvent actionEvent)\r
- {\r
-\r
- }\r
-\r
- public void png_actionPerformed(ActionEvent actionEvent)\r
- {\r
-\r
- }\r
-\r
- public void eps_actionPerformed(ActionEvent actionEvent)\r
- {\r
-\r
- }\r
-\r
- public void viewMapping_actionPerformed(ActionEvent actionEvent)\r
- {\r
-\r
- }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ */
+package jalview.jbgui;
+
+import javax.swing.*;
+import java.awt.event.ActionListener;
+import java.awt.event.ActionEvent;
+
+public class GStructureViewer extends JInternalFrame
+{
+ public GStructureViewer()
+ {
+ try
+ {
+ jbInit();
+ } catch (Exception ex)
+ {
+ ex.printStackTrace();
+ }
+ }
+
+ private void jbInit() throws Exception
+ {
+ this.setJMenuBar(menuBar);
+ fileMenu.setText("File");
+ savemenu.setActionCommand("Save Image");
+ savemenu.setText("Save As");
+ pdbFile.setText("PDB File");
+ pdbFile.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ pdbFile_actionPerformed(actionEvent);
+ }
+ });
+ png.setText("PNG");
+ png.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ png_actionPerformed(actionEvent);
+ }
+ });
+ eps.setText("EPS");
+ eps.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ eps_actionPerformed(actionEvent);
+ }
+ });
+ viewMapping.setText("View Mapping");
+ viewMapping.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ viewMapping_actionPerformed(actionEvent);
+ }
+ });
+ viewMenu.setText("View");
+ chainMenu.setText("Show Chain");
+ colourMenu.setText("Colours");
+ backGround.setText("Background Colour...");
+ backGround.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ backGround_actionPerformed(actionEvent);
+ }
+ });
+ seqColour.setSelected(true);
+ seqColour.setText("By Sequence");
+ seqColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ seqColour_actionPerformed(actionEvent);
+ }
+ });
+ chainColour.setText("By Chain");
+ chainColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ chainColour_actionPerformed(actionEvent);
+ }
+ });
+ chargeColour.setText("Charge & Cysteine");
+ chargeColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ chargeColour_actionPerformed(actionEvent);
+ }
+ });
+ zappoColour.setText("Zappo");
+ zappoColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ zappoColour_actionPerformed(actionEvent);
+ }
+ });
+ taylorColour.setText("Taylor");
+ taylorColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ taylorColour_actionPerformed(actionEvent);
+ }
+ });
+ hydroColour.setText("Hydro");
+ hydroColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ hydroColour_actionPerformed(actionEvent);
+ }
+ });
+ strandColour.setText("Strand");
+ strandColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ strandColour_actionPerformed(actionEvent);
+ }
+ });
+ helixColour.setText("Helix Propensity");
+ helixColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ helixColour_actionPerformed(actionEvent);
+ }
+ });
+ turnColour.setText("Turn Propensity");
+ turnColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ turnColour_actionPerformed(actionEvent);
+ }
+ });
+ buriedColour.setText("Buried Index");
+ buriedColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ buriedColour_actionPerformed(actionEvent);
+ }
+ });
+ userColour.setText("User Defined ...");
+ userColour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ userColour_actionPerformed(actionEvent);
+ }
+ });
+ helpMenu.setText("Help");
+ jmolHelp.setText("Jmol Help");
+ jmolHelp.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent actionEvent)
+ {
+ jmolHelp_actionPerformed(actionEvent);
+ }
+ });
+ menuBar.add(fileMenu);
+ menuBar.add(viewMenu);
+ menuBar.add(colourMenu);
+ menuBar.add(helpMenu);
+ fileMenu.add(savemenu);
+ fileMenu.add(viewMapping);
+ savemenu.add(pdbFile);
+ savemenu.add(png);
+ savemenu.add(eps);
+ viewMenu.add(chainMenu);
+ colourMenu.add(seqColour);
+ colourMenu.add(chainColour);
+ colourMenu.add(chargeColour);
+ colourMenu.add(zappoColour);
+ colourMenu.add(taylorColour);
+ colourMenu.add(hydroColour);
+ colourMenu.add(helixColour);
+ colourMenu.add(strandColour);
+ colourMenu.add(turnColour);
+ colourMenu.add(buriedColour);
+ colourMenu.add(userColour);
+ colourMenu.add(backGround);
+ helpMenu.add(jmolHelp);
+ }
+
+ JMenuBar menuBar = new JMenuBar();
+
+ JMenu fileMenu = new JMenu();
+
+ JMenu savemenu = new JMenu();
+
+ JMenuItem pdbFile = new JMenuItem();
+
+ JMenuItem png = new JMenuItem();
+
+ JMenuItem eps = new JMenuItem();
+
+ JMenuItem viewMapping = new JMenuItem();
+
+ JMenu viewMenu = new JMenu();
+
+ protected JMenu chainMenu = new JMenu();
+
+ JMenu jMenu1 = new JMenu();
+
+ JMenu colourMenu = new JMenu();
+
+ JMenuItem backGround = new JMenuItem();
+
+ protected JCheckBoxMenuItem seqColour = new JCheckBoxMenuItem();
+
+ JMenuItem chainColour = new JMenuItem();
+
+ JMenuItem chargeColour = new JMenuItem();
+
+ JMenuItem zappoColour = new JMenuItem();
+
+ JMenuItem taylorColour = new JMenuItem();
+
+ JMenuItem hydroColour = new JMenuItem();
+
+ JMenuItem strandColour = new JMenuItem();
+
+ JMenuItem helixColour = new JMenuItem();
+
+ JMenuItem turnColour = new JMenuItem();
+
+ JMenuItem buriedColour = new JMenuItem();
+
+ JMenuItem userColour = new JMenuItem();
+
+ JMenu helpMenu = new JMenu();
+
+ JMenuItem jmolHelp = new JMenuItem();
+
+ public void pdbFile_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void png_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void eps_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void viewMapping_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void seqColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void chainColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void chargeColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void zappoColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void taylorColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void hydroColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void helixColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void strandColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void turnColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void buriedColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void userColour_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void backGround_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+
+ public void jmolHelp_actionPerformed(ActionEvent actionEvent)
+ {
+
+ }
+}
git://source.jalview.org / jalview.git / blobdiff