formatting changes

[jalview.git] / src / jalview / jbgui / GTreePanel.java

diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java
index fe1fe81..e7030b8 100755 (executable)
--- a/src/jalview/jbgui/GTreePanel.java
+++ b/src/jalview/jbgui/GTreePanel.java
@@ -17,6 +17,7 @@ public class GTreePanel extends JInternalFrame
   protected JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();\r
   protected JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();\r
   protected JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();\r
+  protected JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();\r
   JMenuItem pngTree = new JMenuItem();\r
   JMenuItem epsTree = new JMenuItem();\r
   JMenu saveAsMenu = new JMenu();\r
@@ -41,7 +42,7 @@ public class GTreePanel extends JInternalFrame
     this.setFont(new java.awt.Font("Verdana", 0, 12));\r
     scrollPane.setOpaque(false);\r
     jMenu1.setText("File");\r
-    saveAsNewick.setText("Newick format");\r
+    saveAsNewick.setText("Newick Format");\r
     saveAsNewick.addActionListener(new ActionListener()\r
     {\r
       public void actionPerformed(ActionEvent e)\r
@@ -108,6 +109,16 @@ public class GTreePanel extends JInternalFrame
       }\r
     });\r
     saveAsMenu.setText("Save as");\r
+    placeholdersMenu.setToolTipText(\r
+        "Marks leaves of tree not associated with a sequence");\r
+    placeholdersMenu.setText("Mark unlinked leaves");\r
+    placeholdersMenu.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        placeholdersMenu_actionPerformed(e);\r
+      }\r
+    });\r
     this.getContentPane().add(scrollPane, BorderLayout.CENTER);\r
     jMenuBar1.add(jMenu1);\r
     jMenuBar1.add(jMenu2);\r
@@ -117,6 +128,7 @@ public class GTreePanel extends JInternalFrame
     jMenu2.add(fontSize);\r
     jMenu2.add(distanceMenu);\r
     jMenu2.add(bootstrapMenu);\r
+    jMenu2.add(placeholdersMenu);\r
     saveAsMenu.add(saveAsNewick);\r
     saveAsMenu.add(epsTree);\r
     saveAsMenu.add(pngTree);\r
@@ -158,7 +170,12 @@ public class GTreePanel extends JInternalFrame
 \r
   }\r
 \r
-  public void saveAsNewick_actionPerformed(ActionEvent e)\r
+  protected void saveAsNewick_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  protected void placeholdersMenu_actionPerformed(ActionEvent e)\r
   {\r
 \r
   }\r