new method to get map of sequence positions corresponding to alignment columns
[jalview.git] / src / jalview / jbgui / GUserDefinedColours.java
index 9086c39..1801152 100755 (executable)
-package jalview.jbgui;
-
-import javax.swing.*;
-import java.awt.*;
-import java.awt.event.*;
-
-
-public class GUserDefinedColours extends JPanel
-{
-  protected JColorChooser colorChooser = new JColorChooser();
-  protected JPanel buttonPanel = new JPanel();
-  protected GridLayout gridLayout = new GridLayout();
-  JPanel jPanel2 = new JPanel();
-  protected JButton okButton = new JButton();
-  protected JButton applyButton = new JButton();
-  protected JButton loadbutton = new JButton();
-  protected JButton savebutton = new JButton();
-  protected JButton cancelButton = new JButton();
-  FlowLayout flowLayout1 = new FlowLayout();
-
-  public GUserDefinedColours()
-  {
-    try
-    {
-      jbInit();
-    }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-  }
-  private void jbInit() throws Exception
-  {
-    this.setLayout(flowLayout1);
-    buttonPanel.setLayout(gridLayout);
-    gridLayout.setColumns(6);
-    gridLayout.setRows(4);
-    okButton.setFont(new java.awt.Font("Verdana", 0, 11));
-    okButton.setText("OK");
-    okButton.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        okButton_actionPerformed(e);
-      }
-    });
-    applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
-    applyButton.setText("Apply");
-    applyButton.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        applyButton_actionPerformed(e);
-      }
-    });
-    loadbutton.setFont(new java.awt.Font("Verdana", 0, 11));
-    loadbutton.setText("Load scheme");
-    loadbutton.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        loadbutton_actionPerformed(e);
-      }
-    });
-    savebutton.setFont(new java.awt.Font("Verdana", 0, 11));
-    savebutton.setText("Save scheme");
-    savebutton.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        savebutton_actionPerformed(e);
-      }
-    });
-    cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
-    cancelButton.setText("Cancel");
-    cancelButton.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        cancelButton_actionPerformed(e);
-      }
-    });
-    this.setBackground(new Color(212, 208, 223));
-    jPanel2.setOpaque(false);
-    colorChooser.setOpaque(false);
-    this.add(colorChooser, null);
-    this.add(buttonPanel, null);
-     this.add(jPanel2, null);
-    jPanel2.add(okButton, null);
-    jPanel2.add(applyButton, null);
-    jPanel2.add(loadbutton, null);
-    jPanel2.add(savebutton, null);
-    jPanel2.add(cancelButton, null);
-  }
-
-
-  protected void okButton_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void applyButton_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void loadbutton_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void savebutton_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void cancelButton_actionPerformed(ActionEvent e)
-  {
-
-  }
-}
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
+package jalview.jbgui;\r
+\r
+import java.awt.*;\r
+import java.awt.event.*;\r
+import javax.swing.*;\r
+\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class GUserDefinedColours\r
+    extends JPanel\r
+{\r
+  protected JColorChooser colorChooser = new JColorChooser();\r
+  protected JPanel buttonPanel = new JPanel();\r
+  protected GridLayout gridLayout = new GridLayout();\r
+  JPanel lowerPanel = new JPanel();\r
+  protected JButton okButton = new JButton();\r
+  protected JButton applyButton = new JButton();\r
+  protected JButton loadbutton = new JButton();\r
+  protected JButton savebutton = new JButton();\r
+  protected JButton cancelButton = new JButton();\r
+  JPanel namePanel = new JPanel();\r
+  JLabel jLabel1 = new JLabel();\r
+  protected JTextField schemeName = new JTextField();\r
+  BorderLayout borderLayout1 = new BorderLayout();\r
+  JPanel panel1 = new JPanel();\r
+  JPanel okCancelPanel = new JPanel();\r
+  JPanel saveLoadPanel = new JPanel();\r
+  BorderLayout borderLayout3 = new BorderLayout();\r
+  GridBagLayout gridBagLayout1 = new GridBagLayout();\r
+  BorderLayout borderLayout2 = new BorderLayout();\r
+  FlowLayout flowLayout1 = new FlowLayout();\r
+  BorderLayout borderLayout4 = new BorderLayout();\r
+  JPanel jPanel4 = new JPanel();\r
+  BorderLayout borderLayout5 = new BorderLayout();\r
+  JLabel label = new JLabel();\r
+  protected JPanel casePanel = new JPanel();\r
+  protected JCheckBox caseSensitive = new JCheckBox();\r
+  protected JButton lcaseColour = new JButton();\r
+  /**\r
+   * Creates a new GUserDefinedColours object.\r
+   */\r
+  public GUserDefinedColours()\r
+  {\r
+    try\r
+    {\r
+      jbInit();\r
+    }\r
+    catch (Exception e)\r
+    {\r
+      e.printStackTrace();\r
+    }\r
+\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @throws Exception DOCUMENT ME!\r
+   */\r
+  private void jbInit()\r
+      throws Exception\r
+  {\r
+    this.setLayout(borderLayout4);\r
+    buttonPanel.setLayout(gridLayout);\r
+    gridLayout.setColumns(4);\r
+    gridLayout.setRows(5);\r
+    okButton.setFont(new java.awt.Font("Verdana", 0, 11));\r
+    okButton.setText("OK");\r
+    okButton.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        okButton_actionPerformed(e);\r
+      }\r
+    });\r
+    applyButton.setFont(new java.awt.Font("Verdana", 0, 11));\r
+    applyButton.setText("Apply");\r
+    applyButton.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        applyButton_actionPerformed(e);\r
+      }\r
+    });\r
+    loadbutton.setFont(new java.awt.Font("Verdana", 0, 11));\r
+    loadbutton.setText("Load scheme");\r
+    loadbutton.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        loadbutton_actionPerformed(e);\r
+      }\r
+    });\r
+    savebutton.setFont(new java.awt.Font("Verdana", 0, 11));\r
+    savebutton.setText("Save scheme");\r
+    savebutton.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        savebutton_actionPerformed(e);\r
+      }\r
+    });\r
+    cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));\r
+    cancelButton.setText("Cancel");\r
+    cancelButton.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        cancelButton_actionPerformed(e);\r
+      }\r
+    });\r
+    this.setBackground(new Color(212, 208, 223));\r
+    lowerPanel.setOpaque(false);\r
+    lowerPanel.setLayout(borderLayout3);\r
+    colorChooser.setOpaque(false);\r
+    jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    jLabel1.setText("Name");\r
+    namePanel.setMinimumSize(new Dimension(300, 31));\r
+    namePanel.setOpaque(false);\r
+    namePanel.setPreferredSize(new Dimension(240, 25));\r
+    namePanel.setLayout(borderLayout1);\r
+    schemeName.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    schemeName.setPreferredSize(new Dimension(105, 21));\r
+    schemeName.setText("");\r
+    schemeName.setHorizontalAlignment(SwingConstants.CENTER);\r
+    panel1.setLayout(flowLayout1);\r
+    panel1.setOpaque(false);\r
+    okCancelPanel.setOpaque(false);\r
+    saveLoadPanel.setOpaque(false);\r
+    jPanel4.setLayout(borderLayout5);\r
+    label.setFont(new java.awt.Font("Verdana", Font.ITALIC, 10));\r
+    label.setOpaque(false);\r
+    label.setPreferredSize(new Dimension(260, 34));\r
+    label.setText(\r
+        "<html>Save your colour scheme with a unique name and it will be added " +\r
+        "to the Colour menu.</html>");\r
+    caseSensitive.setText("Case Sensitive");\r
+    caseSensitive.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        caseSensitive_actionPerformed(e);\r
+      }\r
+    });\r
+    lcaseColour.setText("Lower Case Colour");\r
+    lcaseColour.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        lcaseColour_actionPerformed(e);\r
+      }\r
+    });\r
+\r
+    saveLoadPanel.add(savebutton);\r
+    saveLoadPanel.add(loadbutton);\r
+    okCancelPanel.add(applyButton);\r
+    okCancelPanel.add(okButton);\r
+    okCancelPanel.add(cancelButton);\r
+    lowerPanel.add(saveLoadPanel, java.awt.BorderLayout.NORTH);\r
+    lowerPanel.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+\r
+    namePanel.add(schemeName, java.awt.BorderLayout.CENTER);\r
+    namePanel.add(jLabel1, java.awt.BorderLayout.WEST);\r
+    panel1.add(namePanel, null);\r
+    panel1.add(buttonPanel, null);\r
+    panel1.add(casePanel);\r
+    casePanel.add(caseSensitive);\r
+    casePanel.add(lcaseColour);\r
+    panel1.add(lowerPanel, null);\r
+    panel1.add(label);\r
+\r
+    jPanel4.add(panel1, java.awt.BorderLayout.CENTER);\r
+    this.add(jPanel4, java.awt.BorderLayout.CENTER);\r
+    this.add(colorChooser, java.awt.BorderLayout.EAST);\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param e DOCUMENT ME!\r
+   */\r
+  protected void okButton_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param e DOCUMENT ME!\r
+   */\r
+  protected void applyButton_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param e DOCUMENT ME!\r
+   */\r
+  protected void loadbutton_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param e DOCUMENT ME!\r
+   */\r
+  protected void savebutton_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param e DOCUMENT ME!\r
+   */\r
+  protected void cancelButton_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void caseSensitive_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+\r
+  public void lcaseColour_actionPerformed(ActionEvent e)\r
+  {\r
+\r
+  }\r
+}\r