+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.jbgui;
import jalview.ws.dbsources.PDBRestClient.PDBDocField;
+import jalview.ws.dbsources.PDBRestClient.PDBDocField.Group;
+import java.util.ArrayList;
import java.util.Collection;
+import java.util.Comparator;
import java.util.HashMap;
-import java.util.HashSet;
+import java.util.LinkedHashSet;
+import java.util.List;
import javax.swing.JScrollPane;
import javax.swing.JTable;
+import javax.swing.RowSorter;
+import javax.swing.SortOrder;
import javax.swing.table.AbstractTableModel;
+import javax.swing.table.TableModel;
+import javax.swing.table.TableRowSorter;
+
@SuppressWarnings("serial")
public class PDBDocFieldPreferences extends JScrollPane
private HashMap<String, PDBDocField> map = new HashMap<String, PDBDocField>();
- private static Collection<PDBDocField> searchSummaryFields = new HashSet<PDBDocField>();
+ private static Collection<PDBDocField> searchSummaryFields = new LinkedHashSet<PDBDocField>();
- private static Collection<PDBDocField> structureSummaryFields = new HashSet<PDBDocField>();
+ private static Collection<PDBDocField> structureSummaryFields = new LinkedHashSet<PDBDocField>();
public enum PreferenceSource
{
{
searchSummaryFields.add(PDBDocField.PDB_ID);
searchSummaryFields.add(PDBDocField.TITLE);
+ searchSummaryFields.add(PDBDocField.RESOLUTION);
structureSummaryFields.add(PDBDocField.PDB_ID);
structureSummaryFields.add(PDBDocField.TITLE);
+ structureSummaryFields.add(PDBDocField.RESOLUTION);
}
public PDBDocFieldPreferences(PreferenceSource source)
{
tbl_pdbDocFieldConfig.setAutoCreateRowSorter(true);
+
+
+
this.getViewport().add(tbl_pdbDocFieldConfig);
this.currentSource = source;
switch (source)
{
case SEARCH_SUMMARY:
- columnNames = new String[]
- { "PDB Feild", "Show in search summary" };
+ columnNames = new String[] { "", "Display", "Group" };
break;
case STRUCTURE_CHOOSER:
- columnNames = new String[]
- { "PDB Feild", "Show in structure summary" };
+ columnNames = new String[] { "", "Display", "Group" };
break;
case PREFERENCES:
- columnNames = new String[]
- { "PDB Feild", "Show in search summary", "Show in structure summary" };
+ columnNames = new String[] { "PDB Field", "Show in search summary",
+ "Show in structure summary" };
break;
default:
break;
switch (source)
{
case SEARCH_SUMMARY:
- data[x++] = new Object[]
- { field.getName(), searchSummaryFields.contains(field) };
+ data[x++] = new Object[] { searchSummaryFields.contains(field),
+ field.getName(), field.getGroup() };
break;
case STRUCTURE_CHOOSER:
- data[x++] = new Object[]
- { field.getName(), structureSummaryFields.contains(field) };
+ data[x++] = new Object[] { structureSummaryFields.contains(field),
+ field.getName(), field.getGroup() };
break;
case PREFERENCES:
- data[x++] = new Object[]
- { field.getName(), searchSummaryFields.contains(field),
+ data[x++] = new Object[] { field.getName(),
+ searchSummaryFields.contains(field),
structureSummaryFields.contains(field) };
break;
default:
PDBFieldTableModel model = new PDBFieldTableModel(columnNames, data);
tbl_pdbDocFieldConfig.setModel(model);
+
+ switch (source)
+ {
+ case SEARCH_SUMMARY:
+ case STRUCTURE_CHOOSER:
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(0)
+ .setPreferredWidth(30);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(0).setMinWidth(20);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(0).setMaxWidth(40);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(1)
+ .setPreferredWidth(150);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(1).setMinWidth(150);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(2)
+ .setPreferredWidth(150);
+ tbl_pdbDocFieldConfig.getColumnModel().getColumn(2)
+.setMinWidth(150);
+
+ TableRowSorter<TableModel> sorter = new TableRowSorter<>(
+ tbl_pdbDocFieldConfig.getModel());
+ tbl_pdbDocFieldConfig.setRowSorter(sorter);
+ List<RowSorter.SortKey> sortKeys = new ArrayList<>();
+ int columnIndexToSort = 2;
+ sortKeys.add(new RowSorter.SortKey(columnIndexToSort,
+ SortOrder.ASCENDING));
+ sorter.setSortKeys(sortKeys);
+ sorter.setComparator(
+ columnIndexToSort,
+ new Comparator<jalview.ws.dbsources.PDBRestClient.PDBDocField.Group>()
+ {
+ @Override
+ public int compare(Group o1, Group o2)
+ {
+ return o1.getSortOrder() - o2.getSortOrder();
+ }
+ });
+ sorter.sort();
+
+ tbl_pdbDocFieldConfig
+ .setAutoResizeMode(JTable.AUTO_RESIZE_NEXT_COLUMN);
+ break;
+ case PREFERENCES:
+ default:
+ break;
+ }
+
}
public static Collection<PDBDocField> getSearchSummaryFields()
private String[] columnNames;
+ @Override
public int getColumnCount()
{
return columnNames.length;
}
+ @Override
public int getRowCount()
{
return data.length;
}
+ @Override
public String getColumnName(int col)
{
return columnNames[col];
}
+ @Override
public Object getValueAt(int row, int col)
{
return data[row][col];
* each cell. If we didn't implement this method, then the last column would
* contain text ("true"/"false"), rather than a check box.
*/
+ @Override
public Class getColumnClass(int c)
{
return getValueAt(0, c).getClass();
/*
* Don't need to implement this method unless your table's editable.
*/
+ @Override
public boolean isCellEditable(int row, int col)
{
// Note that the data/cell address is constant,
// no matter where the cell appears onscreen.
- return col == 1 || col == 2;
+ // !isPDBID(row, col) ensures the PDB_Id cell is never editable as it
+ // serves as a unique id for each row.
+ // return (col == 1 || col == 2) && !isPDBID(row, col);
+ switch (currentSource)
+ {
+ case SEARCH_SUMMARY:
+ case STRUCTURE_CHOOSER:
+ return (col == 0) && !isPDBID(row, 1);
+ case PREFERENCES:
+ return (col == 1 || col == 2) && !isPDBID(row, 0);
+ default:
+ return false;
+ }
+
+ }
+
+ /**
+ * Determines whether the data in a given cell is a PDB ID.
+ *
+ * @param row
+ * @param col
+ * @return
+ */
+ public boolean isPDBID(int row, int col)
+ {
+ boolean matched = false;
+ String name = getValueAt(row, col).toString();
+ PDBDocField pdbField = map.get(name);
+ if (pdbField == PDBDocField.PDB_ID)
+ {
+ matched = true;
+ }
+ return matched;
}
/*
* Don't need to implement this method unless your table's data can change.
*/
+ @Override
public void setValueAt(Object value, int row, int col)
{
data[row][col] = value;
fireTableCellUpdated(row, col);
- String name = getValueAt(row, 0).toString();
+ String name = null;
+ switch (currentSource)
+ {
+ case SEARCH_SUMMARY:
+ case STRUCTURE_CHOOSER:
+ name = getValueAt(row, 1).toString();
+ break;
+ case PREFERENCES:
+ name = getValueAt(row, 0).toString();
+ break;
+ default:
+ break;
+ }
boolean selected = ((Boolean) value).booleanValue();
PDBDocField pdbField = map.get(name);
}
private void updatePrefs(Collection<PDBDocField> prefConfig,
- PDBDocField pdbField,
- boolean selected)
+ PDBDocField pdbField, boolean selected)
{
if (prefConfig.contains(pdbField) && !selected)
{
git://source.jalview.org / jalview.git / blobdiff