+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.json.binding.biojson.v1;
import com.github.reinert.jjschema.Attributes;
-
-
public class SequencePojo
{
- @Attributes(required = true, description = "Serial version identifier for the <b>seqs</b> object model")
- private String svid = "1.0";
-
- @Attributes(required = true,minLength=3,maxLength=1999999999, description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
+ @Attributes(
+ required = true,
+ minLength = 3,
+ maxLength = 2147483647,
+ description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
private String seq;
@Attributes(required = true, description = "Sequence name")
private String name;
- @Attributes(required = false, description = "Sequence type", enums = {"DNA", "RNA", "Protein"})
+ @Attributes(required = false, description = "Sequence type", enums = {
+ "DNA", "RNA", "Protein" })
private String type;
- @Attributes(required = true, description = "Unique identifier for a given Sequence")
+ @Attributes(
+ required = true,
+ description = "Unique identifier for a given Sequence")
private String id;
-
- @Attributes(required = false, description = "The order/position of a sequence in the alignment space")
+
+ @Attributes(
+ required = false,
+ description = "The order/position of a sequence in the alignment space")
private int order;
-
- @Attributes(required = true, description = "The index of the sequence’s first residue in its source database, <br>using a one-based numbering index system")
+
+ @Attributes(
+ required = true,
+ description = "The index of the sequence’s first residue in its source database, <br>using a one-based numbering index system")
private int start;
- @Attributes(required = true, description = "The index of the sequence’s last residue in its source database, <br>using a one-based numbering index system")
+ @Attributes(
+ required = true,
+ description = "The index of the sequence’s last residue in its source database, <br>using a one-based numbering index system")
private int end;
-
public SequencePojo()
{
}
this.name = name;
this.seq = seq;
}
+
public String getSeq()
{
return seq;
this.order = order;
}
- public String getSvid()
- {
- return svid;
- }
-
public String getType()
{
return type;