JAL-3401 reset 'no repaint' flag after New View / copyAlignPanel

[jalview.git] / src / jalview / project / Jalview2XML.java

diff --git a/src/jalview/project/Jalview2XML.java b/src/jalview/project/Jalview2XML.java
index c28f24d..cadc253 100644 (file)
--- a/src/jalview/project/Jalview2XML.java
+++ b/src/jalview/project/Jalview2XML.java
@@ -3020,7 +3020,7 @@ public class Jalview2XML
     {
       if (ds.getCodonFrames() != null)
       {
-        Desktop.getInstance().getStructureSelectionManager()
+        Desktop.getStructureSelectionManager()
                 .registerMappings(ds.getCodonFrames());
       }
     }
@@ -3658,7 +3658,7 @@ public class Jalview2XML
             {
               entry.setProperty(prop.getName(), prop.getValue());
             }
-            Desktop.getInstance().getStructureSelectionManager()
+            Desktop.getStructureSelectionManager()
                     .registerPDBEntry(entry);
             // adds PDBEntry to datasequence's set (since Jalview 2.10)
             if (al.getSequenceAt(i).getDatasetSequence() != null)
@@ -6118,14 +6118,7 @@ public class Jalview2XML
     AlignFrame af = loadFromObject(jm, null, false, null);
     af.getAlignPanels().clear();
     af.closeMenuItem_actionPerformed(true);
-
-    /*
-     * if(ap.av.getAlignment().getAlignmentAnnotation()!=null) { for(int i=0;
-     * i<ap.av.getAlignment().getAlignmentAnnotation().length; i++) {
-     * if(!ap.av.getAlignment().getAlignmentAnnotation()[i].autoCalculated) {
-     * af.alignPanel.av.getAlignment().getAlignmentAnnotation()[i] =
-     * ap.av.getAlignment().getAlignmentAnnotation()[i]; } } }
-     */
+    af.alignPanel.setHoldRepaint(false);
 
     return af.alignPanel;
   }