// properties/rendering attributes as a global 'alignment group' which holds
// all vis settings for the alignment as a whole rather than a subset
//
- if (aa.label.startsWith("Information"))
+ if (aa.label.contains("_HMM"))
{
HiddenMarkovModel hmm = aa.sequenceRef.getHMM();
return AAFrequency.extractHMMProfile(hmm, column,
boolean scaleColLabel = false;
final AlignmentAnnotation consensusAnnot = av
.getAlignmentConsensusAnnotation();
- final AlignmentAnnotation informationAnnot = av
- .getAlignmentInformationAnnotation();
final AlignmentAnnotation structConsensusAnnot = av
.getAlignmentStrucConsensusAnnotation();
final AlignmentAnnotation complementConsensusAnnot = av
renderProfile = av_renderProfile;
normaliseProfile = av_normaliseProfile;
}
- else if (row == informationAnnot)
+ else if (row.label.contains("_HMM"))
{
renderHistogram = av_renderInformationHistogram;
renderProfile = av_renderHMMProfile;